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New posts in snakemake

shell() function in run does not use singularity

snakemake

snakemake - do not delete output of failed rules

snakemake

Snakemake: remove output file

snakemake

Snakemake expand using dictionary values

python bioinformatics snakemake

'No values given for wildcard error' in snakemake

python snakemake

Using Docker with Snakemake (as motivated by the Snakemake documentation) does not provide a true docker container?

docker conda snakemake singularity-container

Force a certain rule to execute at the end

workflow snakemake

Executing checkpoint intermediate Commands

bioinformatics snakemake

Snakemake workflow runs locally but not as github action?

github-actions snakemake

Acess scripts in external snakemake directory without defining absolute path

snakemake

Snakemake: Is it possible to use directories as wildcards?

python bioinformatics pipeline snakemake

Are files defined in the log section of a snakemake rule much different from the ones defined in the output section?

logging snakemake

Snakemake: How to save and access sample details in config.yml file?

python snakemake

RSeQC with multiQC and snakemake

bioinformatics snakemake

Execute certain rule at the very end

workflow snakemake

Snakemake - rule that downloads data

download snakemake
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