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New posts in snakemake

How can I use a for loop to programmatically generate snakemake rules?

snakemake

Would it make sense to use Snakemake and Dask together?

python amazon-web-services dask snakemake

Snakemake - Wildcards in input files cannot be determined from output files

python python-3.x pipeline snakemake

snakemake: how to deal with variable number of output from a rule

snakemake

snakemake randomly identifying outputs as incomplete

python snakemake

fastqc using Snakemake

bioinformatics snakemake

using conda environments in simple snakemake workflows

conda snakemake

Snakemake: how to realize a mechanism to copy input/output files to/from tmp folder and apply rule there

hpc slurm snakemake tmp

Problem while creating environment from yaml file - iphop

python conda bioinformatics snakemake

A way to iterate over one rule by changing an index in the filename using wildcards (in snakemake)

python wildcard bioinformatics snakemake

'expand' won't do what I want. How do I generate a custom list of inputs to a rule in Snakemake?

python snakemake

Conditional execution of one rule or another depending on the arguments given to a snakemake pipeline

snakemake

lambda function in snakemake output

snakemake

How to set binding memory limits in snakemake

snakemake

Handling SIGPIPE error in snakemake

snakemake sigpipe

awk command fails in snakemake --use-singularity

bash snakemake singularity-container

Building a workflow with dynamic input without using deprecated dynamic API

bioinformatics snakemake

snakemake: is there a way to specify an output directory for each rule?

snakemake

How to use expand in snakemake when some particular combinations of wildcards are not desired?

python wildcard python-itertools higher-order-functions snakemake

Using STAR shared memory module in Snakemake for sequential alignment tasks

python shared-memory snakemake
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