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New posts in snakemake

Snakemake how to execute downstream rules when an upstream rule fails

snakemake

Multiple inputs and outputs in a single rule Snakemake file

python-3.x snakemake

Snakemake + docker example, how to use volumes

docker snakemake singularity-container

snakemake - output one only file from multiple input files in one rule

snakemake

Restrict number of jobs by a rule in snakemake

snakemake

snakemake define folder as output

snakemake

Snakemake: 'Missing input files' due to wrong wildcard expansion

snakemake

How to properly use wildcards in input and output

snakemake

What would be an elegant way of preventing snakemake from failing upon shell/R error?

snakemake

Always run rule in Snakefile (snakemake)

python snakemake

Snakemake: confusion on how to access config files properly

indexing config wildcard curly-braces snakemake

emacs mode for snakemake?

python emacs makefile snakemake

How to run only one rule in snakemake

snakemake

How to do a partial expand in Snakemake?

python-3.x variable-expansion snakemake

Is Snakemake params function evaluated before input file existence?

parameters snakemake

What are snakemake metadata files? When can I erase those?

snakemake

Printing simplified DAG plot with snakemake

snakemake

Snakemake hangs when cluster (slurm) cancelled a job

jobs slurm cancellation snakemake

Meaning of the benchmark variables in snakemake

psutil snakemake

Use of Snakemake workflows in AWS Batch

snakemake aws-batch
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