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New posts in snakemake

Snakemake: how to realize a mechanism to copy input/output files to/from tmp folder and apply rule there

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Problem while creating environment from yaml file - iphop

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A way to iterate over one rule by changing an index in the filename using wildcards (in snakemake)

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'expand' won't do what I want. How do I generate a custom list of inputs to a rule in Snakemake?

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Conditional execution of one rule or another depending on the arguments given to a snakemake pipeline

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lambda function in snakemake output

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How to set binding memory limits in snakemake

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Handling SIGPIPE error in snakemake

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awk command fails in snakemake --use-singularity

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Building a workflow with dynamic input without using deprecated dynamic API

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snakemake: is there a way to specify an output directory for each rule?

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How to use expand in snakemake when some particular combinations of wildcards are not desired?

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SLURM / Sbatch creates many small output files

slurm snakemake sbatch

How to prevent snakemake from deleting output folders from failed jobs?

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Snakemake slurm ouput file redirect to new directory

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Implementation How to use expand in snakemake when some particular combinations of wildcards are not desired?

python wildcard snakemake

problem with snakemake submitting jobs with multiple wildcard on SGE

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Using STAR shared memory module in Snakemake for sequential alignment tasks

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