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New posts in fastq
get content from variable whose name is taken from another variable
Jun 20, 2026
bash
variables
eval
fastq
Grep that tolerates mismatches to subset .fastq
Jun 07, 2026
awk
grep
bioinformatics
fastq
sequencing
Generate all versions of a string with each letter replaced by a wildcard (?) once in bash
May 05, 2026
bash
grep
wildcard
bioinformatics
fastq
Trim Illumina reads in a bam/sam file
Mar 09, 2026
bioinformatics
fastq
Read FASTQ file into a Spark dataframe
Jan 30, 2026
scala
apache-spark
apache-spark-sql
bioinformatics
fastq
Does multiple runs make it parallel?
Dec 03, 2025
parallel-processing
operating-system
fastq
How to get a base file name from a path without multiple extensions
Sep 19, 2025
python
string
path
fastq
How can I make my Python script faster?
Oct 22, 2022
python
performance
bioinformatics
fastq
Read list of files on unix and run command
Aug 18, 2017
bash
list
loops
unix
fastq
bash: /bin/ls: Argument list too long
Oct 12, 2019
list
ls
fastq
How do I use parallel programming/multi threading in my bash script?
Nov 05, 2022
multithreading
bash
parallel-processing
fastq
Converting FASTQ to FASTA with SED/AWK
Apr 05, 2022
shell
awk
sed
fasta
fastq