Assume I have a data.table containing some baseball players:
library(plyr) library(data.table) bdt <- as.data.table(baseball) For each group (given by player 'id'), I want to select rows corresponding to the maximum number of games 'g'. This is straightforward in plyr:
ddply(baseball, "id", subset, g == max(g)) What's the equivalent code for data.table?
I tried:
setkey(bdt, "id") bdt[g == max(g)] # only one row bdt[g == max(g), by = id] # Error: 'by' or 'keyby' is supplied but not j bdt[, .SD[g == max(g)]] # only one row This works:
bdt[, .SD[g == max(g)], by = id] But it's is only 30% faster than plyr, suggesting it's probably not idiomatic.
Here's the fast data.table way:
bdt[bdt[, .I[g == max(g)], by = id]$V1] This avoids constructing .SD, which is the bottleneck in your expressions.
edit: Actually, the main reason the OP is slow is not just that it has .SD in it, but the fact that it uses it in a particular way - by calling [.data.table, which at the moment has a huge overhead, so running it in a loop (when one does a by) accumulates a very large penalty.
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