I have a pandas DataFrame that I want to upload to a new CSV file. The problem is that I don't want to save the file locally before transferring it to s3. Is there any method like to_csv for writing the dataframe to s3 directly? I am using boto3.
Here is what I have so far:
import boto3
s3 = boto3.client('s3', aws_access_key_id='key', aws_secret_access_key='secret_key')
read_file = s3.get_object(Bucket, Key)
df = pd.read_csv(read_file['Body'])
# Make alterations to DataFrame
# Then export DataFrame to CSV through direct transfer to s3
You can write pandas dataframe as CSV directly to S3 using the df. to_csv(s3URI, storage_options).
Navigate to All Settings > Raw Data Export > CSV Upload. Toggle the switch to ON. Select Amazon S3 Bucket from the dropdown menu. Enter your Access Key ID, Secret Access Key, and bucket name.
You can use:
from io import StringIO # python3; python2: BytesIO
import boto3
bucket = 'my_bucket_name' # already created on S3
csv_buffer = StringIO()
df.to_csv(csv_buffer)
s3_resource = boto3.resource('s3')
s3_resource.Object(bucket, 'df.csv').put(Body=csv_buffer.getvalue())
You can directly use the S3 path. I am using Pandas 0.24.1
In [1]: import pandas as pd
In [2]: df = pd.DataFrame( [ [1, 1, 1], [2, 2, 2] ], columns=['a', 'b', 'c'])
In [3]: df
Out[3]:
a b c
0 1 1 1
1 2 2 2
In [4]: df.to_csv('s3://experimental/playground/temp_csv/dummy.csv', index=False)
In [5]: pd.__version__
Out[5]: '0.24.1'
In [6]: new_df = pd.read_csv('s3://experimental/playground/temp_csv/dummy.csv')
In [7]: new_df
Out[7]:
a b c
0 1 1 1
1 2 2 2
Release Note:
S3 File Handling
pandas now uses s3fs for handling S3 connections. This shouldn’t break any code. However, since s3fs is not a required dependency, you will need to install it separately, like boto in prior versions of pandas. GH11915.
I like s3fs which lets you use s3 (almost) like a local filesystem.
You can do this:
import s3fs
bytes_to_write = df.to_csv(None).encode()
fs = s3fs.S3FileSystem(key=key, secret=secret)
with fs.open('s3://bucket/path/to/file.csv', 'wb') as f:
f.write(bytes_to_write)
s3fs
supports only rb
and wb
modes of opening the file, that's why I did this bytes_to_write
stuff.
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