I just updated lme4 to version 1.0-4 and when I run lmer() my mixed effects model, which was converging before, now prints this warning:
Warning message:
In (function (fn, par, lower = rep.int(-Inf, n), upper = rep.int(Inf, :
failure to converge in 10000 evaluations
So, I'd like to try to increase the number of iterations to see if I can fix this. (I must say I have no idea what is causing the warning, as the first part of the message sounds a bit opaque). In any case, I read in the documentation that now I should use lmerControl(), but I haven't been able to implement it. Could someone give me a specific example of how you'd do it for concreteness? (the Help file doesn't help). Here is my model:
m <- lmer(RT ~ Factor1*Factor2 + (0+Factor1+Factor2|Subject) + (1|Subject) + (1|Item) + (0+Factor1+Factor2|Item), data= data)
Thanks a lot!
The lmer() function is for linear mixed models and the glmer() function is for generalized mixed models.
The second option tells glmer to fit using the "nloptwrap" optimizer (there are several other optimizers available, too), which tends to be faster than the default optimization method. The impact can be rather startling. With the default options the above model takes about 3 hours to fit.
Maximum likelihood or restricted maximum likelihood (REML) estimates of the pa- rameters in linear mixed-effects models can be determined using the lmer function in the lme4 package for R.
lme4: Linear Mixed-Effects Models using 'Eigen' and S4 The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' "glue". Version: 1.1-30.
The lmerControl
function allows you to choose an optimizer and pass controls parameters to it. The parameters that control numbers of iterations or evaluations vary from function to function (as described in the help page for lmerControl
). The default optimizer is "Nelder_Mead" and for that optimizer choice the maximum number of evaluations can be changed by specifying "maxfun" in the 'optCtrl' parameter list:
m <- lmer(RT ~ Factor1*Factor2 + (0+Factor1+Factor2|Subject) +
(1|Subject) + (1|Item) + (0+Factor1+Factor2|Item),
data= data, control=lmerControl(optCtrl=list(maxfun=20000) ) )
This is not a guarantee that convergence will be reached. (My experience is that the default maximum is usually sufficient.) It's perfectly possible that your data is insufficient to support the complexity of the model or the model is incorrectly constructed for the design of the study.
And belated thanks to @NBrouwer for his note to extend this advice to glmer
with glmControl
.
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