I am trying to connect to a server remotely and then access it's local database with Python. I am successfully connecting to the server, although I can't seem to connect to the database on the server. My code is below:
import psycopg2
from sshtunnel import SSHTunnelForwarder
try:
with SSHTunnelForwarder(
('<server ip address>', 22),
ssh_private_key="</path/to/private/ssh/key>",
ssh_username="<server username>",
remote_bind_address=('localhost', 5432)) as server:
print "server connected"
conn = psycopg2.connect(database="<dbname>",port=server.local_bind_port)
curs = conn.cursor()
print "database connected
except:
print "Connection Failed"
These are pieces of code I have found on the internet and pieced together. I have also tried the connection statements below in place of the code above:
params = {
'database': '<dbname>',
'user': '<dbusername>',
'password': '<dbuserpass>',
'host': 'localhost',
'port': 5432
}
conn = psycopg2.connect(**params)
I know I can connect to the database because on my machine; I am able to use sqlectron
to tunnel in and connect appropriately.
Just in case it is not clear what I am trying to do from above, I need to ssh tunnel into my remote server using a private ssh key on my computer (working properly), and then I need to connect to a PostgreSQL database that is on localhost
at port 5432
.
I am currently getting the current error message for both ways of trying to connect:
2016-01-23 11:16:10,978 | ERROR | Tunnel: 0.0.0.0:49386 <> localhost:5432 error: (9, 'Bad file descriptor')
Type "localhost" in the "Host name/address". Enter your PostgreSQL username and password provided by Hanlon Lab and save your password if you would like. Switch on the "Use SSH tunneling" tab. Enter the hostname provided by the lab in "Tunnel host." Enter your Linux username provided by Hanlon Lab.
How to Connect to PostgreSQL from Python? In order to connect to a PostgreSQL database instance from your Python script, you need to use a database connector library. In Python, you have several options that you can choose from. Some libraries that are written in pure Python include pg8000 and py-postgresql.
Both these examples were very helpful. I just needed to combine the good parts from both.
from sshtunnel import SSHTunnelForwarder #Run pip install sshtunnel
from sqlalchemy.orm import sessionmaker #Run pip install sqlalchemy
from sqlalchemy import create_engine
with SSHTunnelForwarder(
('<remote server ip>', 22), #Remote server IP and SSH port
ssh_username = "<username>",
ssh_password = "<password>",
remote_bind_address=('<local server ip>', 5432)) as server: #PostgreSQL server IP and sever port on remote machine
server.start() #start ssh sever
print 'Server connected via SSH'
#connect to PostgreSQL
local_port = str(server.local_bind_port)
engine = create_engine('postgresql://<username>:<password>@127.0.0.1:' + local_port +'/database_name')
Session = sessionmaker(bind=engine)
session = Session()
print 'Database session created'
#test data retrieval
test = session.execute("SELECT * FROM database_table")
for row in test:
print row['id']
session.close()
I don't know if this may be helpful, but I had to connect to a PostgreSQL database through SSH tunneling as well. I succeeded to connect using your code with some modifications:
import psycopg2
from sshtunnel import SSHTunnelForwarder
try:
with SSHTunnelForwarder(
('<server ip address>', 22),
#ssh_private_key="</path/to/private/ssh/key>",
### in my case, I used a password instead of a private key
ssh_username="<server username>",
ssh_password="<mypasswd>",
remote_bind_address=('localhost', 5432)) as server:
server.start()
print "server connected"
params = {
'database': '<dbname>',
'user': '<dbusername>',
'password': '<dbuserpass>',
'host': 'localhost',
'port': server.local_bind_port
}
conn = psycopg2.connect(**params)
curs = conn.cursor()
print "database connected"
except:
print "Connection Failed"
After adding server.start()
, the code worked nicely. Furthermore, inverted commas were missing after 'database connected'.
I hope this might be helpful to you, thanks for sharing your code!
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