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New posts in bioinformatics
Create a dataframe from a dataframe
Dec 25, 2022
r
dataframe
bioinformatics
reshape
create-table
TypeError: expected bytes, str found in custom python function
Dec 20, 2022
python
function
encoding
error-handling
bioinformatics
How do I decide which way to backtrack in the Smith–Waterman algorithm?
Dec 18, 2022
python
numpy
bioinformatics
How to swap three by three elements in a prolog list?
Dec 15, 2022
list
prolog
bioinformatics
swap
dcg
How to speed-up sed that uses Regex on very large single cell BAM file
Dec 16, 2022
linux
unix
awk
sed
bioinformatics
Frequent words in Python
Dec 13, 2022
python
bioinformatics
string-matching
The which function in R is not giving the desired output
Dec 08, 2022
r
bioinformatics
Parallel running of several jobs in a python script
Dec 07, 2022
python
parallel-processing
bioinformatics
How to handle multiple optimal edit paths implementing Needleman-Wunsche algorithm?
Nov 26, 2022
bioinformatics
sequence-alignment
Extracting Info from Plain Text and Writing to XML Using DOM
Nov 16, 2022
python
xml
dom
bioinformatics
A way of testing a set of genomic locations for exon/intron/utr?
Nov 14, 2022
r
annotations
bioinformatics
bioconductor
genetics
Biopython record extra 2 nucleotides either side of gene for +2,-2 reading frames
Nov 10, 2022
python-3.x
bioinformatics
biopython
Attempting to Obtain Taxonomic Information from Biopython
Nov 04, 2022
list
loops
iteration
bioinformatics
biopython
how to get all dna encoding for peptide in c#
Nov 03, 2022
c#
bioinformatics
How to speed up 4 million set intersections?
Nov 01, 2022
python
set
bioinformatics
Compute affinity matrix from distance matrix
Oct 24, 2022
python
bioinformatics
affinity
Shelve dictionary size is >100Gb for a 2Gb text file
Oct 22, 2022
python
out-of-memory
bioinformatics
shelve
Efficiency of finding mismatched patterns
Aug 19, 2022
python
python-3.x
algorithm
performance
bioinformatics
R extract part of string
Oct 28, 2022
r
regex
string
bioinformatics
vcf-variant-call-format
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