There's actually an issue filed on Connect, which is currently reviewed by Microsoft. So brings in some room for the reasonable suspicion that this is a bug of Visual Studio 2015.
There is also a workaround available:
Posted by DaisyDave on 12/15/2015 at 2:40 AM
Opening solutions from within the IDE stops these folders appearing.
It seems to be (finally) fixed in recent Visual Studio Update 3 RC (works for me at least).
Also there is another "more permanent" workaround from EricStj - MSFT (copy-pasted from his comment to relevant issue here) for those who would prefer to wait for RTM version of this update and have to skip current RC version:
The fix didn't make it into Update 2. It should come out in Update 3. To workaround you can copy this file replace this file "C:\Program Files (x86)\Reference Assemblies\Microsoft\Framework.NETCore\v5.0\GlobalDTARSettings.proj" with the version from here: https://gist.github.com/ericstj/b40dd3846c3faec5ea1ba55fce64d1f8.
In general I open solutions from Windows Explorer rather than from within Visual Studio. If you're like me the Connect issue mentioned in Andreas' answer has a second workaround, for opening the solution from Windows Explorer:
Posted by Dee Key on 3/4/2016 at 11:22 AM
From the Windows File Explorer right-click on the solution file and Open with Visual Studio 2015.
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