Let's say I have string of length in multiple of 3.
my $seq = "CTTCGAATT"; # in this case length of 9
Is there a way I can split it into equal length of 3? Such that in the end I have this array:
$VAR = ["CTT", "CGA", "ATT"];
Take a look at the solution at How can I split a string into chunks of two characters each in Perl?
Especially the unpack
might be interesting:
my @codons = unpack("(A3)*", $seq);
Iterate over multiples of three, using substr
to get pieces to push
into a list.
my $str = join '', map { ('A','T','C','G')[ rand 4 ] } 0 .. 900 ; # Random string
my @codons = $str =~ /[ACTG]{3}/g; # Process in chunks of three
# '/g' flag necessary
print 'Size of @codons array : ',
scalar @codons; # '300'
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