Returning multiple values from pandas apply on a DataFrame

Question

I'm using a Pandas DataFrame to do a row-wise t-test as per this example:

import numpy import pandas  df = pandas.DataFrame(numpy.log2(numpy.randn(1000, 4),                        columns=["a", "b", "c", "d"])  df = df.dropna() 

Now, supposing I have "a" and "b" as one group, and "c" and "d" at the other, I'm performing the t-test row-wise. This is fairly trivial with pandas, using apply with axis=1. However, I can either return a DataFrame of the same shape if my function doesn't aggregate, or a Series if it aggregates.

Normally I would just output the p-value (so, aggregation) but I would like to generate an additional value based on other calculations (in other words, return two values). I can of course do two runs, aggregating the p-values first, then doing the other work, but I was wondering if there is a more efficient way to do so as the data is reasonably large.

As an example of the calculation, a hypotethical function would be:

from scipy.stats import ttest_ind  def t_test_and_mean(series, first, second):     first_group = series[first]     second_group = series[second]     _, pvalue = ttest_ind(first_group, second_group)      mean_ratio = second_group.mean() / first_group.mean()      return (pvalue, mean_ratio) 

Then invoked with

df.apply(t_test_and_mean, first=["a", "b"], second=["c", "d"], axis=1) 

Of course in this case it returns a single Series with the two tuples as value.

Instead, ny expected output would be a DataFrame with two columns, one for the first result, and one for the second. Is this possible or I have to do two runs for the two calculations, then merge them together?

Answer 1

Returning a Series, rather than tuple, should produce a new multi-column DataFrame. For example,

return pandas.Series({'pvalue': pvalue, 'mean_ratio': mean_ratio})