Logo Questions Linux Laravel Mysql Ubuntu Git Menu
 

Rcpp Rtools installed but error message g++ not found

I have consulted existing entries on SO related to my specific issue, but still could not resolve it.

I am trying to do this with my machine at work, where I have limited admin rights, but I can run Rtools.exe, so I installed it.

My setup for R is:

 platform       x86_64-w64-mingw32          
 arch           x86_64                      
 os             mingw32                     
 system         x86_64, mingw32             
 version.string R version 3.3.0 (2016-05-03)

I am RStudion Version 0.99.902. I installed Rtools version 3.3.0.1959.

All of R, Rstudio, and Rtools are installed in C:/WORK/, which is where I have some limited admin rights.

In my system ENV variable, I have set up:

 C:\\WORK\\Rtools\\bin; C:\\WORK\\Rtools\\gcc-  4.6.3\\bin; C:\\WORK\\R-3.3.0\\bin\\x64;" 

When I run

 system('where make')

I get

 C:\WORK\Rtools\bin\make.exe

When I run

 system('g++ -v')

I get:

 Using built-in specs.
 COLLECT_GCC=C:\WORK\Rtools\GCC-46~1.3\bin\G__~1.EXE
 COLLECT_LTO_WRAPPER=c:/WORK/rtools/gcc-46~1.3/bin/../libexec/gcc/i686-w64-   mingw32/4.6.3/lto-wrapper.exe
 Target: i686-w64-mingw32
 Configured with: /data/gannet/ripley/Sources/mingw-test3/src/gcc/configure --host=i686-w64-mingw32 --build=x86_64-linux-gnu --target=i686-w64-mingw32 --with-sysroot=/data/gannet/ripley/Sources/mingw-test3/mingw32mingw32/mingw32 --prefix=/data/gannet/ripley/Sources/mingw-test3/mingw32mingw32/mingw32 --with-gmp=/data/gannet/ripley/Sources/mingw-test3/mingw32mingw32/prereq_install --with-mpfr=/data/gannet/ripley/Sources/mingw-test3/mingw32mingw32/prereq_install --with-mpc=/data/gannet/ripley/Sources/mingw-test3/mingw32mingw32/prereq_install --disable-shared --enable-static --enable-targets=all --enable-languages=c,c++,fortran --enable-libgomp --enable-sjlj-exceptions --enable-fully-dynamic-string --disable-nls --disable-werror --enable-checking=release --disable-win32-registry --disable-rpath --disable-werror CFLAGS='-O2 -mtune=core2 -fomit-frame-pointer' LDFLAGS=
 Thread model: win32
 gcc version 4.6.3 20111208 (prerelease) (GCC) 

When I compile, I get this error:

 Error in compileCode(f, code, language = language, verbose = verbose) : 
 Compilation ERROR, function(s)/method(s) not created!
 c:/Rtools/mingw_64/bin/g++: not found

My question is: why is R still looking for g++ in

 c:/Rtools/mingw_64/bin/g++

Didn't I already set R to look for it in

 C:/WORK/Rtools? 

Even when I manually added

 c:/WORK/Rtools/mingw_64/bin/g++

in the ENV variable, I still got the same error. (I cannot make Rtools folder in C:/ due to admin rights.)

Has anyone run into this specific issue?

like image 348
DavidH Avatar asked Aug 23 '16 01:08

DavidH


4 Answers

The path c:/Rtools/mingw_64/bin/ is hard-coded into the file Makeconflocated somewhere in the R installation (in my case C:\Progs\R\R-3.4.1\etc\x64), as the value of the variable BINPREF.

The easiest thing to do is to change this path to your path C:/WORK/Rtools/bin (in my case was C:/Progs/RTools/3.4/mingw_64/bin/). That worked for me in a fresh installation of R-3.4.1 and Rtools3.4, and a minimal example.

like image 67
Linus Ker Avatar answered Oct 21 '22 16:10

Linus Ker


What is happening is the need to be on RTools 34 and NOT 33 for R 3.3.x.

Remove the rtools install and then follow the guide here:

http://thecoatlessprofessor.com/programming/rcpp/install-rtools-for-rcpp/

@David, you need to remove all instances of C:\WORK\Rtools\<something> and any duplicates (e.g. C:\WORK\R-3.3.0\bin\x64 appears twice.) Then add:

c:\WORK\Rtools\bin; c:\WORK\Rtools\mingw_32\bin;

like image 44
coatless Avatar answered Oct 21 '22 14:10

coatless


I was hitting the same issue on Windows 10 with RStudio 1.3+ and RTools 4.0. After installing RTools and trying to install another package (that needed RTools) it kept throwing the error

c:/rtools40/mingw32/bin/g++: No such file or directory

It kept picking up the wrong path of the RTools installation on windows. After restarting RStudio it picked up the right path:

C:\RBuildTools\4.0\mingw32\bin

like image 34
Abhimanu Kumar Avatar answered Oct 21 '22 16:10

Abhimanu Kumar


A plausible and easy way to do this is to choose "Full installation to build 32 or 64 bit" in the following promp.enter image description here

like image 1
H.Lee Avatar answered Oct 21 '22 15:10

H.Lee