Python ImportError while module is installed [Ubuntu]

Question

I'd like to make a switch from Windows to Linux (Ubuntu) writing my python programs but I just can't get things to work. Here's the problem: I can see that there are quite the number of modules pre-installed (like numpy, pandas, matplotlib, etc.) in Ubuntu. They sit nicely in the /host/Python27/Lib/site-packages directory. But when I write a test python script and try to execute it, it gives me an ImportError whenever I try to import a module (for instance import numpy as np gives me ImportError: No module named numpy). When I type which python in the commandline I get the /usr/bin/python path. I think I might need to change things related to the python path, but I don't know how to do that.

Answer 1

You can use the following command in your terminal to see what folders are in your PYTHONPATH.

python -c "import sys, pprint; pprint.pprint(sys.path)"

I'm guessing /host/Python27/Lib/site-packages wont be in there (it doesn't sound like a normal python path. How did you install these packages?).

If you want to add folders to your PYTHONPATH then use the following:

export PYTHONPATH=$PYTHONPATH:/host/Python27/Lib/site-packages

Personally here are some recommendations for developing with Python:

1. Use virtualenv. It is a very powerful tool that creates sandboxed python environments so you can install modules and keep them separate from the main interpreter.

2. Use pip - When you've created a virtualenv, and activated it you can use pip install to install packages for you. e.g. pip install numpy will install numpy into your virtual environment and will be accessible from only this virtualenv. This means you can also install different versions for testing etc. Very powerful. I would recommend using pip to install your python packages over using ubuntu apt-get install as you are more likely to get the newer versions of modules (apt-get relies on someone packaging the latest versions of your python libraries and may not be available for as many libraries as pip).

3. When writing python scripts that you will make executable (chmod +x my_python_script.py) make sure you put #!/usr/bin/env python at the top as this will pick up the python interpreter in your virtual environment. If you don't (and put #!/usr/bin/python) then running ./my_python_script.py will always use the system python interpreter.

Answer 2

/host/Python27/Lib/site-packages is not a default python directory on linux installations as far as I am aware.

The normal python installation (and python packages) should be found under /usr/lib or /usr/lib64 depending on your processor architecture.

If you want to check where python is searching in addition to these directories you can use a terminal with the following command:

echo $PYTHONPATH

If the /host/Python27/Lib/site-packages path is not listed, attempt to use the following command and try it again:

export PYTHONPATH=$PYTHONPATH:host/Python27/Lib/site-packages

If this should work and you do not want to write this in a terminal every time you want to use these packages, simply put it into a file called .bashrc in your home folder (normally /home/<username>).