Recently I stumbled uppon a strange behaviour of dplyr
and I would be happy if somebody would provide some insights.
Assuming I have a data of which com columns contain some numerical values. In an easy scenario I would like to compute rowSums
. Although there are many ways to do it, here are two examples:
df <- data.frame(matrix(rnorm(20), 10, 2),
ids = paste("i", 1:20, sep = ""),
stringsAsFactors = FALSE)
# works
dplyr::select(df, - ids) %>% {rowSums(.)}
# does not work
# Error: invalid argument to unary operator
df %>%
dplyr::mutate(blubb = dplyr::select(df, - ids) %>% {rowSums(.)})
# does not work
# Error: invalid argument to unary operator
df %>%
dplyr::mutate(blubb = dplyr::select(., - ids) %>% {rowSums(.)})
# workaround:
tmp <- dplyr::select(df, - ids) %>% {rowSums(.)}
df %>%
dplyr::mutate(blubb = tmp)
# works
rowSums(dplyr::select(df, - ids))
# does not work
# Error: invalid argument to unary operator
df %>%
dplyr::mutate(blubb = rowSums(dplyr::select(df, - ids)))
# workaround
tmp <- rowSums(dplyr::select(df, - ids))
df %>%
dplyr::mutate(blubb = tmp)
First, I don't really understand what is causing the error and second I would like to know how to actually achieve a tidy computation of some (viable) columns in a tidy way.
edit
The question mutate and rowSums exclude columns , although related, focuses on using rowSums
for computation. Here I'm eager to understand why the upper examples do not work. It is not so much about how to solve (see the workarounds) but to understand what happens when the naive approach is applied.
Use mutate(). returns selected columns after modifying the existing values with new calculated values in the column. if you want to return only updated column values use transmute(). mutate() adds new variables and preserves existing ones.
rowwise() allows you to compute on a data frame a row-at-a-time. This is most useful when a vectorised function doesn't exist. Most dplyr verbs preserve row-wise grouping. The exception is summarise() , which return a grouped_df.
The examples do not work because you are nesting select
in mutate
and using bare variable names. In this case, select
is trying to do something like
> -df$ids
Error in -df$ids : invalid argument to unary operator
which fails because you can't negate a character string (i.e. -"i1"
or -"i2"
makes no sense). Either of the formulations below works:
df %>% mutate(blubb = rowSums(select_(., "X1", "X2")))
df %>% mutate(blubb = rowSums(select(., -3)))
or
df %>% mutate(blubb = rowSums(select_(., "-ids")))
as suggested by @Haboryme.
select_
is deprecated. You can use:
library(dplyr)
df <- data.frame(matrix(rnorm(20), 10, 2),
ids = paste("i", 1:20, sep = ""),
stringsAsFactors = FALSE)
df %>%
mutate(blubb = rowSums(select(., .dots = c("X1", "X2"))))
# Or more generally:
desired_columns <- c("X1", "X2")
df %>%
mutate(blubb = rowSums(select(., .dots = all_of(desired_columns))))
If you love us? You can donate to us via Paypal or buy me a coffee so we can maintain and grow! Thank you!
Donate Us With