I want to create a jar file with my main java project and all of it's dependencies. so I created the following plugin definition in the pom file:
<plugin>
    <groupId>org.apache.maven.plugins</groupId>
    <artifactId>maven-dependency-plugin</artifactId>
    <version>2.5.1</version>
    <executions>
        <execution>
            <id>copy-dependencies</id>
            <phase>package</phase>
            <goals>
                <goal>copy-dependencies</goal>
            </goals>
            <configuration>
                <!-- exclude junit, we need runtime dependency only -->
                <includeScope>runtime</includeScope>
                <outputDirectory>${project.build.directory}/dependency-jars/</outputDirectory>
            </configuration>
        </execution>
    </executions>
</plugin>
so I execute mvn dependency:copy-dependencies, it works fine that it copies all the dependencies to target/dependency instead of dependency-jars. Any ideas?
That is normal: you configured a special execution of the maven-dependency-plugin, named copy-dependencies, however, invoking the goal dependency:copy-dependencies directly on the command line creates a default execution, which is different than the one you configured. Thus, your configuration isn't taken into account.
In Maven, there are 2 places where you can configure plugins: either for all executions (using <configuration> at the <plugin> level) or for each execution (using <configuration> at the <execution> level).
There are several ways to solve your issue:
Move the <configuration> outside of the <execution>, and make it general for all executions. You would have:
<plugin>
  <artifactId>maven-dependency-plugin</artifactId>
  <version>2.5.1</version>
  <configuration>
    <!-- exclude junit, we need runtime dependency only -->
    <includeScope>runtime</includeScope>
    <outputDirectory>${project.build.directory}/dependency-jars/</outputDirectory>
  </configuration>
</plugin>
Note that, with this, all executions of the plugin will use this configuration (unless overriden inside a specific execution configuration).
Execute on the command line a specific execution, i.e. the one you configured. This is possible since Maven 3.3.1 and you would execute
mvn dependency:copy-dependencies@copy-dependencies
The @copy-dependencies is used to refer to the <id> of the execution you want to invoke.
Bind your execution to a specific phase of the Maven lifecycle, and let it be executed with the normal flow of the lifecycle. In your configuration, it is already bound to the package phase with <phase>package</phase>. So, invoking mvn clean package would work and copy your dependencies at the configured location.
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