I'm using a PC with Windows 7 and a Python 3.4 Jupyter notebook from Anaconda3 version 2.3.0.
I'm attempting to run the cell magic bash
command from a Jupyter notebook and am having problems that I imagine others will encounter as well.
From what I've seen in tutorials, it should be as simple as...
%%bash
pwd
When I attempt this, I get the error "Couldn't find program: 'bash'". This is true for other bash
commands. I have also tried !bash and that has not worked.
A few strange observations that may help:
I am able to run bash commands that don't require parameters as long as they are the first line in the cell.
In:
ls
Out:
Volume in drive D is DATA
Volume Serial Number is XXXX-XXXX
Directory of D:\...
05/19/2016 06:25 PM <DIR> .
However if I put a return above the command, it seems to interpret the cell as python and gives the "name 'ls' is not defined" error.
If I attempt to call the bash
line magic command %bash
I get the below error:
'ERROR: Line magic function `%bash` not found (But cell magic `%%bash` exists, did you mean that instead?)'.
Thanks in advance for any help.
Did you try what the error message said to try?
i.e. '%%bash' instead of '%bash'
This page seems to indicate that you're going to want two percent signs to utilize the bash script magic.
Edit. Tailored answer to no longer be to specific errawr message. When I run %lsmagic I get the following:
%lsmagic
Available line magics:
%alias %alias_magic %autocall %automagic %autosave %bookmark %cd %clear %cls %colors %config %connect_info %copy %ddir %debug
%dhist %dirs %doctest_mode %echo %ed %edit %env %gui %hist
%history %install_default_config %install_ext %install_profiles %killbgscripts %ldir
%less %load %load_ext %loadpy %logoff %logon %logstart %logstate %logstop %ls %lsmagic %macro %magic
%matplotlib %mkdir %more %notebook %page %pastebin %pdb %pdef %pdoc %pfile %pinfo %pinfo2
%popd %pprint %precision
%profile %prun %psearch %psource %pushd %pwd %pycat %pylab %qtconsole %quickref %recall %rehashx
%reload_ext %ren %rep %rerun %reset %reset_selective %rmdir %run %save %sc %set_env %store %sx
%system %tb %time %timeit %unalias %unload_ext %who %who_ls %whos %xdel %xmode
Available cell magics:
%%! %%HTML %%SVG %%bash %%capture %%cmd %%debug %%file %%html %%javascript
%%latex %%perl %%prun %%pypy %%python %%python2 %%python3 %%ruby %%script %%sh %%svg %%sx %%system
%%time %%timeit %%writefile
Automagic is ON, % prefix IS NOT needed for line magics.
The following command works:
%%cmd
dir
buruzaemon nailed it.
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