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install.packages("devtools") on R 3.0.2 fails in Ubuntu 14.04

Tags:

linux

r

ubuntu

I am trying to install the R 3.0.2 devtools package on Ubuntu 14.04 as follows:

install.packages("devtools")

I get the following results:

Installing package into ‘/home/jim/R/x86_64-pc-linux-gnu-library/3.0’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
Warning: dependency ‘xml2’ is not available
also installing the dependency ‘rversions’

trying URL 'http://cran.rstudio.com/src/contrib/rversions_1.0.1.tar.gz'
Content type 'application/x-gzip' length 4624 bytes
opened URL
==================================================
downloaded 4624 bytes

trying URL 'http://cran.rstudio.com/src/contrib/devtools_1.8.0.tar.gz'
Content type 'application/x-gzip' length 141487 bytes (138 Kb)
opened URL
==================================================
downloaded 138 Kb

ERROR: dependency ‘xml2’ is not available for package ‘rversions’
* removing ‘/home/jim/R/x86_64-pc-linux-gnu-library/3.0/rversions’
ERROR: dependency ‘rversions’ is not available for package ‘devtools’
* removing ‘/home/jim/R/x86_64-pc-linux-gnu-library/3.0/devtools’

The downloaded source packages are in
    ‘/tmp/RtmpmDzsRJ/downloaded_packages’
Warning messages:
1: In install.packages("devtools") :
  installation of package ‘rversions’ had non-zero exit status
2: In install.packages("devtools") :
  installation of package ‘devtools’ had non-zero exit status

It appears there is a dependency on a package named xml2. Does anyone know where I can find this package and how I can install it.

I have already installed the following:

sudo apt-get install libxml2-dev
sudo apt-get install libcurl4-openssl-dev
sudo apt-get install libcurl4-gnutls-dev
sudo apt-get install curl
like image 244
Jim O'Brien Avatar asked Jun 12 '15 01:06

Jim O'Brien


2 Answers

If R is installed in Ubuntu using the software center, the stable version at the time of the Ubuntu build is built is included. Hence R 3.0.2 is installed.

Adding the following to /etc/apt/sources.list:

deb http://cran.rstudio.com/bin/linux/ubuntu trusty/

resulted in the current version (R 3.2.0) being loaded.

I had to install the following OpenSSL library

sudo apt-get install libssl-dev

and then I was able to start R and successfully install 'devtools'

Many thanks to Dirk and Pascal for their advice.

like image 133
Jim O'Brien Avatar answered Sep 24 '22 05:09

Jim O'Brien


Another solution (on version R 3.2.2) is to installing lxml:

$ apt-get install libxml2-dev libxslt-dev

which successfully removed the R error:

Error: configuration failed for package ‘xml2’

appearing in R when running

install.packages("devtools")

like image 36
lynochka Avatar answered Sep 25 '22 05:09

lynochka