I am trying to install R packages using Dockerfile.
I installed the image Rocker/Rstudio.
The content of the Dockerfile is:
# Base image https://hub.docker.com/r/rocker/rstudio
FROM rocker/rstudio:latest
## Create directories
RUN mkdir -p /rstudio
RUN mkdir -p /rscripts
##Install R packages
RUN R -e "install.packages(c('rvest', 'jsonlite', 'data.table' ,'stringr'), repos = 'http://cran.us.r-project.org')"
I then build my image doing: docker build -t my_r_image .
The image builds but the packages are not installed as I get this warning:
Installing packages into ‘/usr/local/lib/R/site-library’ (as ‘lib’ is unspecified) Warning: unable to access index for repository http://cran.us.r-project.org/src/contrib: cannot open URL 'http://cran.us.r-project.org/src/contrib/PACKAGES'
I tried by replacing http://cran.us.r-project.org
by = 'http://cran.rstudio.com/')"
but I get a similar error saying that it is unable to access index for repository.
Anyone has an idea of what I am doing wrong?
edit1: See below output I get when I do:
.libPaths()
[1] "/usr/local/lib/R/site-library" "/usr/local/lib/R/library"
install.packages(c('rvest', 'jsonlite', 'data.table' ,'stringr'), repos = 'http://cran.us.r-project.org')
Warning in install.packages :
unable to access index for repository https://mran.microsoft.com/snapshot/2019-10-15/src/contrib:
cannot open URL 'https://mran.microsoft.com/snapshot/2019-10-15/src/contrib/PACKAGES'
Installing packages into ‘/usr/local/lib/R/site-library’
(as ‘lib’ is unspecified)
Warning in install.packages :
unable to access index for repository http://cran.us.r-project.org/src/contrib:
cannot open URL 'http://cran.us.r-project.org/src/contrib/PACKAGES'
Warning in install.packages :
packages ‘rvest’, ‘jsonlite’, ‘data.table’, ‘stringr’ are not available (for R version 3.6.1)
strangely enough, with exactly the same Dockerfile, I had no problem installing the packages using the rocker/tidyverse repository instead of the rocker/rstudio. Anyone knows why is that?
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