Let's say I have this image this:
With a black scratch and I want to remove it from my image. I know it is noise. I have tried neighbourhood filter and also gaussian filter but no success.
If you know the location of the scratch, this problem is known as inpainting, and there are very sophisticated algorithms for that. So one approach would be to detect the scratch as good as you can, then use a standard inpainting algorithm on it. I've played with your image in Mathematica a little:
First I applied a median filter to the image. As you found out yourself, this removes the scratch, but also removes a lot of detail. The difference between median and original image is a good indicator for your scratch, though:
When I binarize this image with a manually selected threshold, I get a quick&dirty scratch detector:
If you have more knowledge about what your scratches look like, you can improve this detector a lot. e.g. are the scratches always dark? Do they always have high contrast? Are they always smooth curves, i.e. is their curvature always low? - Each of these properties can be measured somehow, so you'd combine these measurements to a single image and binarize that.
One small improvement is to remove small components:
This is still not perfect, but the result is good enough to use it as an inpainting mask:
This will remove some detail, too, but the differences are harder to spot.
Full Mathematica code:
difference = ImageDifference[sourceImage, MedianFilter[sourceImage, 2]];
mask = DeleteSmallComponents[Binarize[difference, 0.15], 15];
Inpaint[sourceImage, mask]
EDIT:
If you're don't have access to a standard inpainting algorithm (like Navier Stokes or Telea), a poor man's algorithm would be to use the median filtered image in those regions where the mask is 1 (probably something like mask*sourceImage + (1-mask)*medialFilteredImage
in Matlab). Depending on the image data, the difference might not be worth the extra effort of a "real" inpainting algorithm:
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