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How to get matplotlib and latex work together?

I have the following problem and I am totally new to matplotlib and python: To produce high qualitiy plots for my thesis I want to use matplotlib and I want to use the latex commands for the axes etc. When I try the following example (from http://matplotlib.org/users/usetex.html#usetex-tutorial):

import numpy as np 
import matplotlib.pyplot as plt


# Example data 
t = np.arange(0.0, 1.0 + 0.01, 0.01) 
s = np.cos(4 * np.pi * t) + 2

plt.rc('text', usetex=True) 
plt.rc('font', family='serif') 
plt.plot(t, s)

plt.xlabel(r'\textbf{time} (s)')
plt.ylabel(r'\textit{voltage} (mV)',fontsize=16) 
plt.title(r"\TeX\ is Number "
          r"$\displaystyle\sum_{n=1}^\infty\frac{-e^{i\pi}}{2^n}$!",
          fontsize=16, color='gray')
# Make room for the ridiculously large title. 
plt.subplots_adjust(top=0.8)

plt.savefig('tex_demo') 
plt.show()

I get the following message:

  File "test.py", line 21, in <module>
    plt.savefig('tex_demo')
  File "/usr/lib/pymodules/python2.7/matplotlib/pyplot.py", line 561, in savefig
    return fig.savefig(*args, **kwargs)
  File "/usr/lib/pymodules/python2.7/matplotlib/figure.py", line 1421, in savefig
    self.canvas.print_figure(*args, **kwargs)
  File "/usr/lib/pymodules/python2.7/matplotlib/backend_bases.py", line 2220, in print_figure
    **kwargs)
  File "/usr/lib/pymodules/python2.7/matplotlib/backends/backend_agg.py", line 505, in print_png
    FigureCanvasAgg.draw(self)
  File "/usr/lib/pymodules/python2.7/matplotlib/backends/backend_agg.py", line 451, in draw
    self.figure.draw(self.renderer)
  File "/usr/lib/pymodules/python2.7/matplotlib/artist.py", line 55, in draw_wrapper
    draw(artist, renderer, *args, **kwargs)
  File "/usr/lib/pymodules/python2.7/matplotlib/figure.py", line 1034, in draw
    func(*args)
  File "/usr/lib/pymodules/python2.7/matplotlib/artist.py", line 55, in draw_wrapper
    draw(artist, renderer, *args, **kwargs)
  File "/usr/lib/pymodules/python2.7/matplotlib/axes.py", line 2086, in draw
    a.draw(renderer)
  File "/usr/lib/pymodules/python2.7/matplotlib/artist.py", line 55, in draw_wrapper
    draw(artist, renderer, *args, **kwargs)
  File "/usr/lib/pymodules/python2.7/matplotlib/axis.py", line 1105, in draw
    self.label.draw(renderer)
  File "/usr/lib/pymodules/python2.7/matplotlib/artist.py", line 55, in draw_wrapper
    draw(artist, renderer, *args, **kwargs)
  File "/usr/lib/pymodules/python2.7/matplotlib/text.py", line 594, in draw
    self._fontproperties, angle, mtext=self)
  File "/usr/lib/pymodules/python2.7/matplotlib/backends/backend_agg.py", line 241, in draw_tex
    self._renderer.draw_text_image(Z, x, y, angle, gc)
OverflowError: cannot convert float infinity to integer

I'm new to Linux (Ubuntu 14.04) and maybe have done something wrong when installing matplotlib; here is what I have done to install matplotlib etc.:

sudo apt-get install python3
sudo apt-get install python-matplotlib
sudo apt-get build-dep python-matplotlib

I am using texmaker and thought this could be the problem; so I did the following:

sudo aptitude install texlive-fonts-recommended texlive-fonts-extra

If I try any other plots including latex commands I get similar error messages, or plots without any lables for the axes.

like image 548
DonkeyKong Avatar asked Jul 12 '15 22:07

DonkeyKong


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1 Answers

Your problem has been seen before as reported here on the matplotlib-user mailing list. The resolution is here and the confirmation that it works is here.

In summary, you need to clear the tex.cache directory.

To find where that directory is - go into python and execute matplotlib.get_cachedir()

For a standard Ubuntu 14.04 install - you should get something like the following:

~$ python3
Python 3.4.0 (default, Apr 11 2014, 13:05:11) 
[GCC 4.8.2] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import matplotlib as mpl
>>> mpl.get_cachedir()
'/home/<username>/.cache/matplotlib'

Then do rm <path/to/cache/from/above>/tex.cache/* and then re-run and it should all work.


Docs issue

Some tips like this are available in the usetex troubleshooting docs section, which lead to here to locate the directory, but they unfortunately don't mention get_cachedir()

Edit Pull Request generated based on this question and merged into the matplotlib docs.

like image 199
J Richard Snape Avatar answered Oct 16 '22 06:10

J Richard Snape