I am performing an ANCOVA so as to test what is the relationship between body size (covariate, logLCC
) and different head measures (response variable, logLP
) in each sex (cathegorical variable, sexo
).
I got the slopes for each sex in the lm
and I would like to compare them to 1. More specifically, I would like to know if the slopes are significantly higher or less than 1, or if they are equal to 1, as this would have different biological meanings in their allometric relationships.
Here is my code:
#Modelling my lm#
> lm.logLP.sexo.adu<-lm(logLP~logLCC*sexo, data=ADU)
> anova(lm.logLP.sexo.adu)
Analysis of Variance Table
Response: logLP
Df Sum Sq Mean Sq F value Pr(>F)
logLCC 1 3.8727 3.8727 3407.208 < 2.2e-16 ***
sexo 1 0.6926 0.6926 609.386 < 2.2e-16 ***
logLCC:sexo 1 0.0396 0.0396 34.829 7.563e-09 ***
Residuals 409 0.4649 0.0011
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
#Obtaining slopes#
> lm.logLP.sexo.adu$coefficients
(Intercept) logLCC sexoM logLCC:sexoM
-0.1008891 0.6725818 -1.0058962 0.2633595
> lm.logLP.sexo.adu1<-lstrends(lm.logLP.sexo.adu,"sexo",var="logLCC")
> lm.logLP.sexo.adu1
sexo logLCC.trend SE df lower.CL upper.CL
H 0.6725818 0.03020017 409 0.6132149 0.7319487
M 0.9359413 0.03285353 409 0.8713585 1.0005241
Confidence level used: 0.95
#Comparing slopes#
> pairs(lm.logLP.sexo.adu1)
contrast estimate SE df t.ratio p.value
H - M -0.2633595 0.04462515 409 -5.902 <.0001
#Checking whether the slopes are different than 1#
#Computes Summary with statistics
> s1<-summary(lm.logLP.sexo.adu)
> s1
Call:
lm(formula = logLP ~ logLCC * sexo, data = ADU)
Residuals:
Min 1Q Median 3Q Max
-0.13728 -0.02202 -0.00109 0.01880 0.12468
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -0.10089 0.12497 -0.807 0.42
logLCC 0.67258 0.03020 22.271 < 2e-16 ***
sexoM -1.00590 0.18700 -5.379 1.26e-07 ***
logLCC:sexoM 0.26336 0.04463 5.902 7.56e-09 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 0.03371 on 409 degrees of freedom
Multiple R-squared: 0.9083, Adjusted R-squared: 0.9076
F-statistic: 1350 on 3 and 409 DF, p-value: < 2.2e-16
#Computes t-student H0: intercept=1. The estimation of coefficients and their s.d. are in s1$coefficients
> t1<-(1-s1$coefficients[2,1])/s1$coefficients[2,2]
#Calculates two tailed probability
> pval<- 2 * pt(abs(t1), df = df.residual(lm.logLP.sexo.adu), lower.tail = FALSE)
> print(pval)
[1] 3.037231e-24
I saw this whole process in several threads here. But all that I can understand is that my slopes are just different from 1. How could I check that they are greater or smaller than 1?
EDITEDSolved!
#performs one-side test H0=slope bigger than 1
pval<-pt(t1, df = df.residual(lm.logLP.sexo.adu), lower.tail = FALSE)
#performs one-side test H0=slope smaller than 1
pval<-pt(t1, df = df.residual(lm.logLP.sexo.adu), lower.tail = TRUE)
Also, tests should be performed in single-sex models.
How could I check that they are greater or smaller than 1?
As in this post, this post, and as your in question, you can make Wald test which you compute by
t1<-(1-s1$coefficients[2,1])/s1$coefficients[2,2]
Alternatively, use the vcov
and coef
function to make the code more readable
fit <- lm.logLP.sexo.adu
t1<-(1-coef(fit)[1])/vcov(fit)[1, 1]
The Wald test gives you t-statistics which can be used to make both a two-sided or one-sided test. Thus, you can drop the abs
and set the lower.tail
argument according to which tail you want to test in.
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