My branches dropdown (the dropdown between the Repositories dropdown and Stash button) is cluttered with lots of old branches that don't even exist on the remote anymore.
How can I clear this?
We have a plugin called "Delete obsolete branches" - Tools > Delete obsolete branches. There you can select and delete branches that were merged into the current trunk.
I rarely use it, so I do not know all nuances of that plugin, and it offers a few different switches. You can probably delete stale branches from other trunks, but I haven't explored it.
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