I am new in R , i plot graph like ring, star. There are special functions for them, but i dont have any idea how can i plot a binary tree with 13 nodes? I used graph.extended.chordal.ring() function but it didnt help. Is there any good tutorial for R studio and how can i plot a binary tree?
library(igraph)
G <- graph.extended.chordal.ring(13, matrix(c(2,4,6), nr=1))
L <- layout.fruchterman.reingold(G)
You can use graph.tree
function, e.g. :
library(igraph)
G <- graph.tree(n=13,children=2)
# let's print it using a tree-specific layout
# (N.B. you must specify the root node)
co <- layout.reingold.tilford(G, params=list(root=1))
plot(G, layout=co)
EDIT (as per comment) :
library(igraph)
G <- graph.tree(n=13,children=2)
#add names to vertex (just assign a upper-case letter to each)
V(G)$name <- LETTERS[1:length(V(G))]
# plot (1)
lay <- layout.reingold.tilford(G, params=list(root='A'))
plot(G, layout=lay, vertex.size=25)
# add a vertex 'O', then a new edge 'G' --> 'O'
G <- G + vertices('O')
G <- G + edge('G', 'O')
# plot again (2)
lay <- layout.reingold.tilford(G, params=list(root='A'))
plot(G, layout=lay, vertex.size=25)
I like @digEmAll's solution, but here is another using my experimental package, btree. It's nice because it represents binary trees as data.table objects (which are essentially data.frames).
library(data.table)
library(ggplot2)
library(btree)
# Make a perfect btree with depth 3 -> 15 total nodes
btree <- make_perfect_btree(depth=3)
btree
NodeId ParentNodeId LeftChildNodeId RightChildNodeId NodePath Depth
1: 1 NA 2 3 0
2: 2 1 4 5 L 1
3: 3 1 6 7 R 1
4: 4 2 8 9 LL 2
5: 5 2 10 11 LR 2
6: 6 3 12 13 RL 2
7: 7 3 14 15 RR 2
8: 8 4 NA NA LLL 3
9: 9 4 NA NA LLR 3
10: 10 5 NA NA LRL 3
11: 11 5 NA NA LRR 3
12: 12 6 NA NA RLL 3
13: 13 6 NA NA RLR 3
14: 14 7 NA NA RRL 3
15: 15 7 NA NA RRR 3
# Remove nodes 14 & 15 to get a tree with 13 nodes. (We're simply removing rows from a data.frame)
btree <- btree[!NodeId %in% c(14, 15)]
# Plot the tree
plot_btree(btree, labelCol = "NodeId")
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