I use a shell script that takes a single directory, called NewData, with whatever is inside of it, and creates this:

There is one step I want to add, and I am not sure how to do it. I want to move the contents of NewData and NewDataCopy into their respective parent directories (ProtectedOrig and Data) and delete NewData and NewDataCopy. What command(s) would I add to my script to do this without specifically naming the files to be moved (they will be different every time I run the script)?
If it would help, you can have a look at the script here. I'm grateful for whatever assistance I can get!
You can move everything without naming the files specifically by using a "glob" (aka a "wildcard"). That's a *.
So let's say you are in DataDirectory. You can move everything from Data/NewDataCopy up to Data by doing this: mv Data/NewDataCopy/* Data/. Then delete with a rmdir Data/NewDataCopy.
Starting from DataDirectory then to do everything you'd do this:
mv Data/NewDataCopy/* Data/
rmdir Data/NewDataCopy
mv ProtectedOrig/NewData/* ProtectedOrig/
rmdir ProtectedOrig/NewData
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