I have one huge file (over 6GB) and about 1000 patterns. I want extract lines matching each of the pattern to separate file. For example my patterns are:
1
2
my file:
a|1
b|2
c|3
d|123
As a output I would like to have 2 files:
1:
a|1
d|123
2:
b|2
d|123
I can do it by greping file multiple times, but it is inefficient for 1000 patterns and huge file. I also tried something like this:
grep -f pattern_file huge_file
but it will make only 1 output file. I can't sort my huge file - it takes to much time. Maybe AWK will make it?
awk -F\| 'NR == FNR {
patt[$0]; next
}
{
for (p in patt)
if ($2 ~ p) print > p
}' patterns huge_file
With some awk implementations you may hit the max number of open files limit. Let me know if that's the case so I can post an alternative solution.
P.S.: This version will keep only one file open at a time:
awk -F\| 'NR == FNR {
patt[$0]; next
}
{
for (p in patt) {
if ($2 ~ p) print >> p
close(p)
}
}' patterns huge_file
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