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Getting NULL after create external table in Hive using parquet file as storage

I am creating external table in Hive using parquet file as a storage

hive> CREATE EXTERNAL TABLE test_data(
      c1 string, c2 int, c3 string, c4 string, c5 string, c6 float,
          c7 string, c8 string, c9 string, c10 string, c11 string, c12 string)
        ROW FORMAT SERDE 'parquet.hive.serde.ParquetHiveSerDe'
        STORED AS INPUTFORMAT 'parquet.hive.DeprecatedParquetInputFormat'
        OUTPUTFORMAT 'parquet.hive.DeprecatedParquetOutputFormat'
        LOCATION '/path/test_data/';

selecting this table getting NULL in any rows and columns

SELECT * FROM test_data;
OK
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL    NULL
Time taken: 0.191 seconds, Fetched: 34 row(s)

I've got parquet file by Pig transformation from tab delimeted file using following sequence

grunt> A = LOAD '/path/test.data' USING PigStorage('\t')
        AS ( c1: chararray,c2: int,c3: chararray,
             c4: chararray,c5: chararray,c6: float,
             c7: chararray,c8: chararray,c9: chararray,
             c10: chararray, c11: chararray, c12: chararray );
grunt> STORE A INTO '/path/test_data' USING parquet.pig.ParquetStorer;

To check up that the parquet file contains valid data read it back

grunt> B = LOAD'/path/test_data' USING parquet.pig.ParquetLoader;
grunt> DUMP B;
(19,14370,rs6054257,G,A,29.0,PASS,NS=3;DP=14;AF=0.5;DB;H2,GT:GQ:DP:HQ,0|0:48:1:51,51,1|0:48:8:51,51,1/1:43:5:.,.)
(20,17330,.,T,A,3.0,q10,NS=3;DP=11;AF=0.017,GT:GQ:DP:HQ,0|0:49:3:58,50,0|1:3:5:65,3,0/0:41:3)
(20,1110696,rs6040355,A,G,T,67.0,PASS,NS=2;DP=10;AF=0.333,0.667;AA=T;DB,GT:GQ:DP:HQ,1|2:21:6:23,27,2|1:2:0:18,2,2/2:35:4)
(20,1230237,.,T,.,47.0,PASS,NS=3;DP=13;AA=T,GT:GQ:DP:HQ,0|0:54:7:56,60,0|0:48:4:51,51,0/0:61:2)
(20,1234567,microsat1,GTC,G,GTCTC,50.0,PASS,NS=3;DP=9;AA=G,GT:GQ:DP,0/1:35:4,0/2:17:2,1/1:40:3)
(20,2234567,.,C,[13:123457[ACGC,50.0,PASS,SVTYPE=BND;NS=3;DP=9;AA=G,GT:GQ:DP,0/1:35:4,0/1:17:2,1/1:40:3)
(20,2234568,.,C,.TC,50.0,PASS,SVTYPE=BND;NS=3;DP=9;AA=G,GT:GQ:DP,0/1:35:4,0/1:17:2,1/1:40:3)
(20,2234569,.,C,CT.,50.0,PASS,SVTYPE=BND;NS=3;DP=9;AA=G,GT:GQ:DP,0/1:35:4,0/1:17:2,1/1:40:3)
(20,3234569,.,C,<INV>,50.0,PASS,SVTYPE=BND;NS=3;DP=9;AA=G,GT:GQ:DP,0/1:35:4,0/1:17:2,1/1:40:3)
(20,4234569,.,N,.[13:123457[,50.0,PASS,SVTYPE=BND;NS=3;DP=9;AA=G,GT:GQ:DP,0/1:35:4,0/1:17:2,./.:40:3)
(20,5234569,.,N,[13:123457[.,50.0,PASS,SVTYPE=BND;NS=3;DP=9;AA=G,GT:GQ:DP,0/1:35:4,0/1:17:2,1/1:40:3)
(Y,17330,.,T,A,3.0,q10,NS=3;DP=11;AF=0.017,GT:GL,0:0,49,0:0,3,1:41,0)

What am I doing wrong?

like image 943
izyryanov Avatar asked Aug 14 '13 07:08

izyryanov


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Video Answer


1 Answers

In my case it seemed that Hive was sensitive to column names.

Having exported my parquet file from a dataframe in Spark, I had to use the exactly the same column name in Hive as I had in the Spark dataframe originally.

When I used generic column names such as c1 I'd get NULL values for all values in that particular column.

like image 67
Thom Lane Avatar answered Sep 21 '22 19:09

Thom Lane