I am trying to run a command using system2
and to set an environment variable using the env
argument, but it appears not to be set. I'm on Linux so this should work [in the helpfile it mentions that env
sometimes doesn't work in Windows].
Does anyone know how to set environment variables in system32
?
E.g.
system2('echo', args='foobar')
# foobar # as expected
system2('echo', args='$X', env="X=foobar")
# # <-- nothing is printed. as if I had just done `echo`
# I expect to see 'foobar' echoed.
# pretty sure the above environment specification is right, but just in case
system2('echo', args='$X', env=c(X='foobar'))
# sh: 1: foobar: not found
# just to show it can work
system('X=foobar; echo $X')
# foobar
I will just use system
as a workaround for now, but the system
helpfile keeps going on about how I should be using system2
.
(If this is a bug, where do I file it?)
> sessionInfo()
R version 3.2.5 (2016-04-14)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu precise (12.04.5 LTS)
locale:
[1] LC_CTYPE=en_AU.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_AU.UTF-8 LC_COLLATE=en_AU.UTF-8
[5] LC_MONETARY=en_AU.UTF-8 LC_MESSAGES=en_AU.UTF-8
[7] LC_PAPER=en_AU.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
Since the command that goes to the shell is just paste(c(env, shQuote(command), args), collapse = " ")
, you can do:
system2("echo", args = "$X", env = c("X=foobar;"))
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