I have two models:
class Book(models.Model):
    title = models.CharField(max_length=250)
    author = models.CharField(max_length=250)
class WordInBook(models.Model):
    book = models.ForeignKey("Book")
    word = models.ForeignKey("Word")
And corresponding serializers:
class BookSerializer(ModelSerializer):
    wordinbook_set = WordInBookSerializer(many=True)
    class Meta:
        model = Book
        fields = ('id', 'title', 'author', 'wordinbook_set')
class WordInBookSerializer(ModelSerializer):
    class Meta:
        model = WordInBook
        fields = ('word')
Now I want to paginate the wordinbook_set. Outside of serialiser it is easy:
book = Book.objects.get(pk=book_id)
paginator = Paginator(book.wordinbook_set.all(), 10)
words = paginator.page(page).object_list
But that leaves me with two separate serialized objects.
Question: how do I paginate wordinbook_set inside the serializer? 
The resulting json should look like this:
{id: '...', title: '...', author: '...', wordinbook_set: [ 10 WordInBook objects here ]}
                Since PaginationSerializer was removed in DRF 3.1, you have to implement your own logic, for further details refer to : https://stackoverflow.com/a/31500287/7469841
So you have to change your BookSerializer to include the pagination behaviour as following :
BookSerializer
class BookSerializer(ModelSerializer):
        wordinbook_set = serializers.SerializerMethodField('paginated_wordinbook')
        class Meta:
            model = Book
            fields = ('id', 'title', 'author', 'wordinbook_set')
        def paginated_wordinbook(self, obj):
            page_size = self.context['request'].query_params.get('size') or 10
            paginator = Paginator(obj.wordinbook_set.all(), page_size)
            page = self.context['request'].query_params.get('page') or 1
            words_in_book = paginator.page(page)
            serializer = WordInBookSerializer(words_in_book, many=True)
            return serializer.data
Firstly You have to use the Paginator found in django.core.paginator to paginate an iterable object:
paginator = Paginator(obj.wordinbook_set.all(), page_size)
Then get the target page from paginated data :
words_in_book = paginator.page(page)
Serialize the paginated set with many=True:
serializer = WordInBookSerializer(words_in_book, many=True)
Also to make the page size dynamic you can use query_params to receive the desired page size, for example you can choose the page size to be 10 in a request and be 100 in a different request, to retrieve the page size:
page_size = self.context['request'].query_params.get('size') or 10
And finally to allow the user to request a certain page, use again the query_params to receive it:
page = self.context['request'].query_params.get('page') or 1
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