I'm new to building conda
package. I've uploaded the package to PyPI
, so I followed this documentation about building conda from pip package. It works when I tried building pyinstrument
from pip
, but I got the following error when I tried building my package.
conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform osx-64: {"torch[version='>=0.4']"}
I found a similar issue here, but adding channel didn't fix my issue since pytorch
exists in default channel.
Here is my meta.yml
file:
{% set name = "scvi" %}
{% set version = "0.1.2" %}
{% set file_ext = "tar.gz" %}
{% set hash_type = "sha256" %}
{% set hash_value = "ca87155662d85605f86c5e86b7b9f64d881b882177b9642fff8f0ea215c6cb1a" %}
package:
name: '{{ name|lower }}'
version: '{{ version }}'
source:
fn: '{{ name }}-{{ version }}.{{ file_ext }}'
url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.{{ file_ext }}
'{{ hash_type }}': '{{ hash_value }}'
build:
number: 0
script: python setup.py install --single-version-externally-managed --record=record.txt
requirements:
run:
- python 3.6
- setuptools
- numpy>=1.0
- torch>=0.4
- matplotlib>=2.0
- scikit-learn>=0.18
- scipy>=1.0
- h5py>=2.8
- pandas>=0.2
- loompy>=2.0
test:
imports:
- scvi
- scvi.dataset
- scvi.metrics
- scvi.models
requires:
- pytest
about:
home: https://github.com/YosefLab/scVI
license: MIT
license_family: MIT
license_file: 'LICENSE'
summary: Single-cell Variational Inference
description: Single-cell Variational Inference
doc_url: https://scvi.readthedocs.io
dev_url: https://github.com/YosefLab/scVI
Any possible solutions or suggestions on which direction I should look into would be very helpful. Thanks!
Turns out that there's a bug in the automatically generated meta.yml
file by running conda skeleton pypi {package name}
. In meta.yml
, it should be pytorch
instead of torch
.
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