Code folding for individual chunks in R Markdown?

Question

Is there a way to have code folding available for individual chunks in an R Markdown document, but not others (without writing customized JavaScript)?

I know I can use the code_folding YAML option, but that applies to the whole document. I'd like to enable it for individual chunks, but not all chunks.

[The reason is for writing a lab that contains instructions that should not be hideable, but with questions that have show/hide solutions.]

Answer 1

After rmarkdown 1.15

This has been implemented (see related issue, PR and NEWS.md). However you should note that this folds only the code and not the output. You need to add some extra config to hide the code by default and not evaluate it.

--- title: "Bohemian Rhapcodey" output:    html_document:     code_folding: hide ---  ## Question 1  Are you in love with your car?  ```{r class.source = NULL, eval = FALSE} summary(cars) ```  ## Question 2  Are you under pressure?  ```{r class.source = NULL, eval = FALSE} plot(pressure) ``` 

Try the knitted HTML on JSFiddle

Before rmarkdown 1.15

The issue was closed on july 2019 on GitHub. A workaround using the details element in html was suggested.

This can work for some use cases until it is actually implemented.

--- title: "Bohemian Rhapcodey" output: html_document ---  ## Question 1  Are you in love with your car?  <details>   <summary>Toggle answer</summary>   ```{r cars}   summary(cars)   ``` </details>  ## Question 2  Are you under pressure?  <details>   <summary>Toggle answer</summary>   ```{r pressure}   plot(pressure)   ``` </details> 

Try the knitted HTML on JSFiddle

Answer 2

The workaround using the details element works well, but to improve discoverability I would recommend adding some code so that the user sees a pointing hand when s/he hovers over the element. This makes it more obvious that the element is interactive. Expanding on 7hibault's example:

<style type="text/css"> details:hover { cursor: pointer } </style>  --- title: "Bohemian Rhapcodey" output: html_document ---  ## Question 1  Are you in love with your car?  <details>   <summary>Toggle answer</summary>   ```{r cars}   summary(cars)   ``` </details> 

Answer 3

With rmarkdown version 2.3

Based on 7hibaut's answer, but not quite the same. Use the option class.source = "fold-show" in the chunk header to show a chunk, when other chunks have been hidden with the code_folding: hide in the YAML, as described on the rmarkdown pull request.

    ---
    title: "Bohemian Rhapsody"
    output: 
      html_document:
      code_folding: hide
    ---

    ## Question 1

    Are you in love with your car?

    ```{r class.source = NULL, eval = FALSE}
    summary(cars)
    ```

    ## Question 2

    Are you under pressure?

    ```{r class.source = NULL, eval = FALSE}
    plot(pressure)
    ```

    ## Question 3

    suggested code

    ```{r class.source = "fold-show", eval = FALSE}
    library(dplyr)
    library(magrittr)
 
    a <- dMeasure::dMeasure$new()
    a$open_emr_db()
    ## active patients
    kensington_clinicians <- a$UserConfig %>>%
      filter(
        grepl(
          "Kensington",
          purrr::map_chr(Location, function(x) paste(x, collapse = ", "))
          # map_chr will create a 'collapsed' version of all the
          # listed locations
        )
    )
    ```