I am trying to use dplyr to connect to a remote database, that I usually query through a ssh tunnel.
I first set up a ssh tunnel like the following:
alias tunnel_ncg='ssh -fNg -L 3307:127.0.0.1:3306 mysqluser@myhost mysql5 -h 127.0.0.1:3306 -P 3307 -u mysqluser -p mypassword'
At this point I can access the database by connecting to localhost:3307. For example:
mysql -h '127.0.0.1' -P 3307 -u mysqluser
If I try to access the same database through dplyr, I get an error complaining that it can't connect to the local MySQL socket:
> conDplyr = src_mysql(dbname = "mydb", user = "mysqluser", password = "mypassword", host = "localhost", port=3307)
Error in .local(drv, ...) :
Failed to connect to database: Error: Can't connect to local MySQL server through socket '/tmp/mysql.sock' (2)
My understanding is that RMySQL/dplyr are trying to looking for a socket file in the local computer, however they should really be looking for it in the remote server. Is there a way to fix this, or a work-around?
UPDATE:
If I try to connect through dbConnect/RMySQL, the connection works fine:
> dbConnect(dbDriver("MySQL"), user="mysqluser", password="mypassword", dbname="mydb", host="127.0.0.1", port=3307)
<MySQLConnection:0,1>
Solution #2: Connect with 127.0. Another possible solution to the >can't connect to local mysql server through socket> error message is to try and connect to the MySQL using the 127.0. 0.1 ip address instead of localhost. When you use localhost to connect to MySQL, the operating system uses the socket connector.
"Try" to run mysql via /etc/init. d/mysql start if it gives you the exact same error from above then you need to copy the mysql. server file from the mysql you downloaded which can be found in the support-files folder inside the mysql folder you downloaded or in the /usr/local/mysql folder and copy it to /etc/init.
As silly as it sounds replacing localhost
with an IP address (127.0.0.1
) solves the problem.
src_mysql(
dbname = "mydb", user = "mysqluser", password = "mypassword",
host = "127.0.0.1", port=3307)
For an explanation take a look at the MySQL documentation:
On Unix, MySQL programs treat the host name localhost specially, in a way that is likely different from what you expect compared to other network-based programs.
For connections to localhost, MySQL programs attempt to connect to the local server by using a Unix socket file. This occurs even if a --port or -P option is given to specify a port number.
To ensure that the client makes a TCP/IP connection to the local server, use --host or -h to specify a host name value of 127.0.0.1, or the IP address or name of the local server.
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