Calling R Function from C++

Question

I would like to, within my own compiled C++ code, check to see if a library package is loaded in R (if not, load it), call a function from that library and get the results back to in my C++ code.

Could someone point me in the right direction? There seems to be a plethora of info on R and different ways of calling R from C++ and vis versa, but I have not come across exactly what I am wanting to do.

Thanks.

Answer 1

Dirk's probably right that RInside makes life easier. But for the die-hards... The essence comes from Writing R Extensions sections 8.1 and 8.2, and from the examples distributed with R. The material below covers constructing and evaluating the call; dealing with the return value is a different (and in some sense easier) topic.

Setup

Let's suppose a Linux / Mac platform. The first thing is that R must have been compiled to allow linking, either to a shared or static R library. I work with an svn copy of R's source, in the directory ~/src/R-devel. I switch to some other directory, call it ~/bin/R-devel, and then

~/src/R-devel/configure --enable-R-shlib make -j 

this generates ~/bin/R-devel/lib/libR.so; perhaps whatever distribution you're using already has this? The -j flag runs make in parallel, which greatly speeds the build.

Examples for embedding are in ~/src/R-devel/tests/Embedding, and they can be made with cd ~/bin/R-devel/tests/Embedding && make. Obviously, the source code for these examples is extremely instructive.

Code

To illustrate, create a file embed.cpp. Start by including the header that defines R data structures, and the R embedding interface; these are located in bin/R-devel/include, and serve as the primary documentation. We also have a prototype for the function that will do all the work

#include <Rembedded.h> #include <Rdefines.h>  static void doSplinesExample(); 

The work flow is to start R, do the work, and end R:

int main(int argc, char *argv[]) {     Rf_initEmbeddedR(argc, argv);     doSplinesExample();     Rf_endEmbeddedR(0);     return 0; } 

The examples under Embedding include one that calls library(splines), sets a named option, then runs a function example("ns"). Here's the routine that does this

static void doSplinesExample() {     SEXP e, result;     int errorOccurred;      // create and evaluate 'library(splines)'     PROTECT(e = lang2(install("library"), mkString("splines")));     R_tryEval(e, R_GlobalEnv, &errorOccurred);     if (errorOccurred) {         // handle error     }     UNPROTECT(1);      // 'options(FALSE)' ...     PROTECT(e = lang2(install("options"), ScalarLogical(0)));     // ... modified to 'options(example.ask=FALSE)' (this is obscure)     SET_TAG(CDR(e), install("example.ask"));     R_tryEval(e, R_GlobalEnv, NULL);     UNPROTECT(1);      // 'example("ns")'     PROTECT(e = lang2(install("example"), mkString("ns")));     R_tryEval(e, R_GlobalEnv, &errorOccurred);     UNPROTECT(1); } 

Compile and run

We're now ready to put everything together. The compiler needs to know where the headers and libraries are

g++ -I/home/user/bin/R-devel/include -L/home/user/bin/R-devel/lib -lR embed.cpp 

The compiled application needs to be run in the correct environment, e.g., with R_HOME set correctly; this can be arranged easily (obviously a deployed app would want to take a more extensive approach) with

R CMD ./a.out 

Depending on your ambitions, some parts of section 8 of Writing R Extensions are not relevant, e.g., callbacks are needed to implement a GUI on top of R, but not to evaluate simple code chunks.

Some detail

Running through that in a bit of detail... An SEXP (S-expression) is a data structure fundamental to R's representation of basic types (integer, logical, language calls, etc.). The line

    PROTECT(e = lang2(install("library"), mkString("splines"))); 

makes a symbol library and a string "splines", and places them into a language construct consisting of two elements. This constructs an unevaluated language object, approximately equivalent to quote(library("splines")) in R. lang2 returns an SEXP that has been allocated from R's memory pool, and it needs to be PROTECTed from garbage collection. PROTECT adds the address pointed to by e to a protection stack, when the memory no longer needs to be protected, the address is popped from the stack (with UNPROTECT(1), a few lines down). The line

    R_tryEval(e, R_GlobalEnv, &errorOccurred); 

tries to evaluate e in R's global environment. errorOccurred is set to non-0 if an error occurs. R_tryEval returns an SEXP representing the result of the function, but we ignore it here. Because we no longer need the memory allocated to store library("splines"), we tell R that it is no longer PROTECT'ed.

The next chunk of code is similar, evaluating options(example.ask=FALSE), but the construction of the call is more complicated. The S-expression created by lang2 is a pair list, conceptually with a node, a left pointer (CAR) and a right pointer (CDR). The left pointer of e points to the symbol options. The right pointer of e points to another node in the pair list, whose left pointer is FALSE (the right pointer is R_NilValue, indicating the end of the language expression). Each node of a pair list can have a TAG, the meaning of which depends on the role played by the node. Here we attach an argument name.

    SET_TAG(CDR(e), install("example.ask")); 

The next line evaluates the expression that we have constructed (options(example.ask=FALSE)), using NULL to indicate that we'll ignore the success or failure of the function's evaluation. A different way of constructing and evaluating this call is illustrated in R-devel/tests/Embedding/RParseEval.c, adapted here as

PROTECT(tmp = mkString("options(example.ask=FALSE)")); PROTECT(e = R_ParseVector(tmp, 1, &status, R_NilValue)); R_tryEval(VECTOR_ELT(e, 0), R_GlobalEnv, NULL); UNPROTECT(2); 

but this doesn't seem like a good strategy in general, as it mixes R and C code and does not allow computed arguments to be used in R functions. Instead write and manage R code in R (e.g., creating a package with functions that perform complicated series of R manipulations) that your C code uses.

The final block of code above constructs and evaluates example("ns"). Rf_tryEval returns the result of the function call, so

SEXP result; PROTECT(result = Rf_tryEval(e, R_GlobalEnv, &errorOccurred)); // ... UNPROTECT(1); 

would capture that for subsequent processing.