Any way to make "Validate Project Settings" warning go away in Xcode 4.3/4.3.1?

Question

Has anyone been able to make the Validate Project Settings / Update to recommended settings warning go away in Xcode since 4.3?

It wants to make some changes that I don't want to accept. I've tried both "Don't Perform Changes" and unchecking the changes I don't want and then "Perform Changes" but the warning refuses to go away. In the past one or the other of those has always made it go away. Xcode has already up'd the project format verison in the project file to the 4.3 value, i.e.,

LastUpgradeCheck = 0430

but it still seems to continue to check.

rdar://11008193 (closed as a duplicate of 10944711)

Answer 1

Try editing the Schemes for your project. Product > Edit Scheme. Go into each scheme associated with the project and explicitly set the values you want. This fixed it for me.