Xcode 5 storyboard compile failure

Question

I'm running Xcode 5 and building for iOS 7. When I try to build this project for archiving I get this error. I get it on my local machine and on my jenkins build server. I have gone through the storyboard and I am not finding any reason for this error. It builds just fine on simulator and device. I am not even sure what runtime.nib is though addEditHCPViewController.nib is reference to one of the View Controllers inside of the storyboard. Any ideas?

CompileStoryboard myApp/Profiles.storyboard
    cd "/builds/Company/workspace/myApp"
    setenv IBSC_MINIMUM_COMPATIBILITY_VERSION 6.1
    setenv PATH "/Applications/Xcode.app/Contents/Developer/Platforms/iPhoneOS.platform/Developer/usr/bin:/Applications/Xcode.app/Contents/Developer/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin"
    setenv XCODE_DEVELOPER_USR_PATH /Applications/Xcode.app/Contents/Developer/usr/bin/..
    /Applications/Xcode.app/Contents/Developer/usr/bin/ibtool --errors --warnings --notices --minimum-deployment-target 6.1 --output-format human-readable-text --compile /builds/Company/workspace/myApp/build/Distribution-iphoneos/myApp.app/Profiles.storyboardc /builds/Company/workspace/myApp/myApp/Profiles.storyboard
/* com.apple.ibtool.document.warnings */
/builds/Company/workspace/myApp/myApp/Profiles.storyboard:jlW-RT-oUY: warning: 2 views are vertically ambiguous.
/builds/Company/workspace/myApp/myApp/Profiles.storyboard:1Qm-h4-IZr: warning: Position is ambiguous for "Picker".
/builds/Company/workspace/myApp/myApp/Profiles.storyboard:d8p-iA-2QW: warning: Frame for "Button" will be different at run time.
/* com.apple.ibtool.errors */
/builds/Company/workspace/myApp/myApp/Profiles.storyboard: error: Compilation failed. Unable to write to path: /builds/Company/workspace/myApp/build/Distribution-iphoneos/myApp.app/Profiles.storyboardc
    Underlying Errors:
        Description: The file “runtime.nib” doesn’t exist.
        Failure Reason: The file doesn’t exist.
        Underlying Errors:
            Description: The operation couldn’t be completed. No such file or directory
            Failure Reason: No such file or directory
        Description: “Profiles.storyboardc” couldn’t be removed.
        Failure Reason: The file doesn’t exist.
        Underlying Errors:
            Description: The operation couldn’t be completed. No such file or directory
            Failure Reason: No such file or directory

CompileStoryboard myApp/Profiles.storyboard
    cd "/builds/Company/workspace/myApp"
    setenv IBSC_MINIMUM_COMPATIBILITY_VERSION 6.1
    setenv PATH "/Applications/Xcode.app/Contents/Developer/Platforms/iPhoneOS.platform/Developer/usr/bin:/Applications/Xcode.app/Contents/Developer/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin"
    setenv XCODE_DEVELOPER_USR_PATH /Applications/Xcode.app/Contents/Developer/usr/bin/..
    /Applications/Xcode.app/Contents/Developer/usr/bin/ibtool --errors --warnings --notices --minimum-deployment-target 6.1 --output-format human-readable-text --compile /builds/Company/workspace/myApp/build/Distribution-iphoneos/myApp.app/Profiles.storyboardc /builds/Company/workspace/myApp/myApp/Profiles.storyboard
/* com.apple.ibtool.document.warnings */
/builds/Company/workspace/myApp/myApp/Profiles.storyboard:d8p-iA-2QW: warning: Frame for "Button" will be different at run time.
/builds/Company/workspace/myApp/myApp/Profiles.storyboard:jlW-RT-oUY: warning: 2 views are vertically ambiguous.
/builds/Company/workspace/myApp/myApp/Profiles.storyboard:1Qm-h4-IZr: warning: Position is ambiguous for "Picker".
/* com.apple.ibtool.errors */
/builds/Company/workspace/myApp/myApp/Profiles.storyboard: error: Compilation failed. Unable to write to path: /builds/Company/workspace/myApp/build/Distribution-iphoneos/myApp.app/Profiles.storyboardc
    Underlying Errors:
        Description: The file “addEditHCPViewController.nib” doesn’t exist.
        Failure Reason: The file doesn’t exist.
        Underlying Errors:
            Description: The operation couldn’t be completed. No such file or directory
            Failure Reason: No such file or directory

Answer 1

I found the answer to this. During a merge in git, the project file had not been merged properly and Profiles.storyboard was being included as a resource twice. When it tried to compile the same resource the second time, it would fail.

Answer 2

I just Cleaned the project, then built it again, afterwards the error disappeared.