Why can I not read from the AWS S3 in Spark application anymore?

Question

I have upgraded to Apache Spark 1.5.1 but I'm not sure if that has caused it. I have my access keys in spark-submit which has always worked.

Exception in thread "main" java.lang.NoSuchMethodError: org.jets3t.service.impl.rest.httpclient.RestS3Service.<init>(Lorg/jets3t/service/security/AWSCredentials;)V

    SQLContext sqlContext = new SQLContext(sc);
    DataFrame df = sqlContext.read()
        .format("com.databricks.spark.csv")
        .option("inferSchema", "true")
        .load("s3n://ossem-replication/gdelt_data/event_data/" + args[0]);

    df.write()
        .format("com.databricks.spark.csv")
        .save("/user/spark/ossem_data/gdelt/" + args[0]);

More of the error below. There is a class that does not contain the method so that means the dependencies are mismatched. It seems like the jets3t does not contain the method RestS3Service.(Lorg/jets3t/service/security/AWSCredentials;)V Can some one explain this to me?

Exception in thread "main" java.lang.NoSuchMethodError: org.jets3t.service.impl.rest.httpclient.RestS3Service.<init>(Lorg/jets3t/service/security/AWSCredentials;)V
    at org.apache.hadoop.fs.s3native.Jets3tNativeFileSystemStore.initialize(Jets3tNativeFileSystemStore.java:60)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:497)
    at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:187)
    at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:102)
    at org.apache.hadoop.fs.s3native.$Proxy24.initialize(Unknown Source)
    at org.apache.hadoop.fs.s3native.NativeS3FileSystem.initialize(NativeS3FileSystem.java:272)
    at org.apache.hadoop.fs.FileSystem.createFileSystem(FileSystem.java:2596)
    at org.apache.hadoop.fs.FileSystem.access$200(FileSystem.java:91)
    at org.apache.hadoop.fs.FileSystem$Cache.getInternal(FileSystem.java:2630)
    at org.apache.hadoop.fs.FileSystem$Cache.get(FileSystem.java:2612)
    at org.apache.hadoop.fs.FileSystem.get(FileSystem.java:370)
    at org.apache.hadoop.fs.Path.getFileSystem(Path.java:296)
    at org.apache.hadoop.mapred.FileInputFormat.singleThreadedListStatus(FileInputFormat.java:256)
    at org.apache.hadoop.mapred.FileInputFormat.listStatus(FileInputFormat.java:228)
    at org.apache.hadoop.mapred.FileInputFormat.getSplits(FileInputFormat.java:313)
    at org.apache.spark.rdd.HadoopRDD.getPartitions(HadoopRDD.scala:207)
    at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:239)
    at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:237)
    at scala.Option.getOrElse(Option.scala:120)
    at org.apache.spark.rdd.RDD.partitions(RDD.scala:237)
    at org.apache.spark.rdd.MapPartitionsRDD.getPartitions(MapPartitionsRDD.scala:35)
    at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:239)
    at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:237)
    at scala.Option.getOrElse(Option.scala:120)
    at org.apache.spark.rdd.RDD.partitions(RDD.scala:237)
    at org.apache.spark.rdd.RDD$$anonfun$take$1.apply(RDD.scala:1277)
    at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:147)
    at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:108)
    at org.apache.spark.rdd.RDD.withScope(RDD.scala:306)
    at org.apache.spark.rdd.RDD.take(RDD.scala:1272)
    at org.apache.spark.rdd.RDD$$anonfun$first$1.apply(RDD.scala:1312)
    at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:147)
    at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:108)
    at org.apache.spark.rdd.RDD.withScope(RDD.scala:306)
    at org.apache.spark.rdd.RDD.first(RDD.scala:1311)
    at com.databricks.spark.csv.CsvRelation.firstLine$lzycompute(CsvRelation.scala:101)
    at com.databricks.spark.csv.CsvRelation.firstLine(CsvRelation.scala:99)
    at com.databricks.spark.csv.CsvRelation.inferSchema(CsvRelation.scala:82)
    at com.databricks.spark.csv.CsvRelation.<init>(CsvRelation.scala:42)
    at com.databricks.spark.csv.DefaultSource.createRelation(DefaultSource.scala:74)
    at com.databricks.spark.csv.DefaultSource.createRelation(DefaultSource.scala:39)
    at com.databricks.spark.csv.DefaultSource.createRelation(DefaultSource.scala:27)
    at org.apache.spark.sql.execution.datasources.ResolvedDataSource$.apply(ResolvedDataSource.scala:125)
    at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:114)
    at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:104)
    at com.bah.ossem.spark.GdeltSpark.main(GdeltSpark.java:20)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:497)

Answer 1

I had the same problem but with Spark 1.6 and I am using Scala instead of Java. The reason for this error is that Spark Core has the Hadoop Client version 2.2 and the Spark cluster installation I was using was 1.6. I had to make the following changes to get it to work.

1. Change the hadoop client dependency to 2.6 (The version of Hadoop I was using)

   "org.apache.hadoop" % "hadoop-client" % "2.6.0",
   

2. Include the hadoop-aws library in my Spark fat jar as this dependency is no longer included in the Hadoop libraries in 1.6

   "org.apache.hadoop" % "hadoop-aws" % "2.6.0",
   

3. Export the AWS key and secret as environment variables.

4. Specify the following Hadoop configuration in SparkConf

   val sparkContext = new SparkContext(sparkConf)
   val hadoopConf = sparkContext.hadoopConfiguration
   hadoopConf.set("fs.s3.impl", "org.apache.hadoop.fs.s3native.NativeS3FileSystem")
   hadoopConf.set("fs.s3.awsAccessKeyId", sys.env.getOrElse("AWS_ACCESS_KEY_ID", ""))
   hadoopConf.set("fs.s3.awsSecretAccessKey", sys.env.getOrElse("AWS_SECRET_ACCESS_KEY", ""))