In python-pandas boxplots with default settings, the red bar is the mean median, and the box signifies the 25th and 75th quartiles, but what exactly do the whiskers mean in this case? Where is the documentation to figure out the exact definition (couldn't find it)?
Example code:
df.boxplot()
Example result:
Description. A Box and Whisker Plot (or Box Plot) is a convenient way of visually displaying the data distribution through their quartiles. The lines extending parallel from the boxes are known as the “whiskers”, which are used to indicate variability outside the upper and lower quartiles.
The box in the box plot will show the median and the first and third quartiles. The length of the upper whisker is the largest value that is no greater than the third quartile plus 1.5 times the interquartile range.
A Box Plot is also known as Whisker plot is created to display the summary of the set of data values having properties like minimum, first quartile, median, third quartile and maximum.
Pandas just wraps the boxplot function from matplotlib. The matplotlib docs have the definition of the whiskers in detail:
whis : float, sequence, or string (default = 1.5)
As a float, determines the reach of the whiskers to the beyond the first and third quartiles. In other words, where IQR is the interquartile range (Q3-Q1), the upper whisker will extend to last datum less than Q3 + whis*IQR). Similarly, the lower whisker will extend to the first datum greater than Q1 - whis*IQR. Beyond the whiskers, data are considered outliers and are plotted as individual points.
Matplotlib (and Pandas) also gives you a lot of options to change this default definition of the whiskers:
Set this to an unreasonably high value to force the whiskers to show the min and max values. Alternatively, set this to an ascending sequence of percentile (e.g., [5, 95]) to set the whiskers at specific percentiles of the data. Finally, whis can be the string 'range' to force the whiskers to the min and max of the data.
Below a graphic that illustrates this from a stats.stackexchange answer. Note that k=1.5 if you don't supply the whis
keyword in Pandas.
You mention in your question that the red line is the mean - it is actually the median.
From the matplotlib link mentioned by Chang She above:
The box extends from the lower to upper quartile values of the data, with a line at the median. The whiskers extend from the box to show the range of the data. Flier points are those past the end of the whiskers.
I didn't experiment, but there is a 'meanline' option which might put the line at the mean.
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