The following code allows me to view a png
image in an iPython notebook. Is there a way to view pdf
image? I don't need to use IPython.display necessarily. I am looking for a way to print a pdf image in a file to the iPython notebook output cell.
## This is for an `png` image from IPython.display import Image fig = Image(filename=('./temp/my_plot.png')) fig
Thank you.
When using GenomeDiagram with Jupyter (iPython), the easiest way to display images is by converting the GenomeDiagram to a PNG image. This can be wrapped using an IPython. display. Image object to make it display in the notebook.
Method 1: Direct insertion using the edit menu Step 2: After that click edit in the jupyter notebook menu. after that click 'insert image'. Edit -> insert image. Step 3: After that, a dialogue box opens up and asks us to locate the file.
The problem you (and others) face is that PDFs cannot be displayed directly in the browser. The only possible way to get something similar is to use an image-converter to create a PNG or JPG out of the PDF and display this one.
This could be done via imagemagick and a custom display function.
A simple solution is to use wand (http://docs.wand-py.org) a python-imagemagick binding. I tried with Ubuntu 13.04:
In text form:
from wand.image import Image as WImage img = WImage(filename='hat.pdf') img
For a multi-page pdf, you can get e.g. the second page via:
img = WImage(filename='hat.pdf[1]')
As recent browsers support to display pdfs with their embedded pdf viewer a possible alternative solution based on an iframe can be implemented as
class PDF(object): def __init__(self, pdf, size=(200,200)): self.pdf = pdf self.size = size def _repr_html_(self): return '<iframe src={0} width={1[0]} height={1[1]}></iframe>'.format(self.pdf, self.size) def _repr_latex_(self): return r'\includegraphics[width=1.0\textwidth]{{{0}}}'.format(self.pdf)
This class implements html and latex representations, hence the pdf will also survive a nbconversion to latex. It can be used like
PDF('hat.pdf',size=(300,250))
With Firefox 33 this results in
To show pdf-s inside ipython/jupyter notebooks you can use IFrame
from IPython.display import IFrame IFrame("./samples/simple3.pdf", width=600, height=300)
Here is the screenshot
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