vector in function - how to do return

Question

I've got a function that should read from file line by line, the reading stops when a line does not begin with '>' or ' '. It should store the lines in vector and return it.
This is code:

    #include <cstdlib>
    #include <iostream>
    #include <string>
    #include <stdio.h>
    #include <fstream>
    #include <vector>

    using namespace std;

    string getseq(char * db_file) // gets sequences from file
            {
                string seqdb;
                vector<string> seqs;
                ifstream ifs(db_file);
                string line;

                //vector<char> seqs[size/3];

                while(ifs.good())
                {
                    getline(ifs, seqdb);
                    if (seqdb[0] != '>' & seqdb[0]!=' ')
                    {
                        seqs.push_back(seqdb);
                    }
                }

            ifs.close();
            //return seqs;

            //return seqs;
            }

    int main(int argc, char * argv[1])
    {
        cout << "Sequences: \n" << getseq(argv[1]) << endl;
        return 0;
    }

Compiler (g++) returns:

    fasta_parser.cpp: In function ‘std::string getseq(char*)’:
    fasta_parser.cpp:32: error: conversion from ‘std::vector<std::basic_string<char, `std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > >’ to non-scalar type ‘std::string’ requested`

Anyone has any idea?

Edit: As Skurmendel ask, I am adding whole code because of memory security violation after

executing compiled code:

#include <cstdlib>
#include <iostream>
#include <string>
#include <stdio.h>
#include <fstream>
#include <vector>

using namespace std;

vector<string> getseq(char * db_file) // pobiera sekwencje z pliku
        {
            string seqdb;
            vector<string> seqs;
            ifstream ifs(db_file);
            string line;

            //vector<char> seqs[size/3];

            while(ifs.good())
            {
                getline(ifs, seqdb);
                if (seqdb[0] != '>' & seqdb[0]!=' ')
                {
                    seqs.push_back(seqdb);
                }
            }

        ifs.close();
        return seqs;
        }

int main(int argc, char * argv[1])
{
    vector<string> seqs;   // Holds our strings.
    getseq(argv[1]); // We don't return anything.

    // This is just a matter of taste, we create an alias for the vector<string> iterator type.
    typedef vector<string>::iterator string_iter;

    // Print prelude.
    cout << "Sekwencje: \n";

    // Loop till we hit the end of the vector.
    for (string_iter i = seqs.begin(); i != seqs.end(); i++)
    {
        cout << *i << " "; // Do processing, add endlines, commas here etc.
    }

    cout << endl;
}

Answer 1

If I understood you, your getseq() should return a vector of strings. Therefore you should change

string getseq(char * db_file)

to

vector<string> getseq(char * db_file)

And if you want to print it on main() you should do it in a loop.

int main() {
     vector<string> str_vec = getseq(argv[1]);
     for(vector<string>::iterator it = str_vec.begin(); it != str_vec.end(); it++) {
         cout << *it << endl;
     }
}

Answer 2

Your function getseq is declared to return std::string but you are trying to return value of another type - std::vector - therefore you got that compiler error. You need to return variable of type std::string (created by concatenating elements of your vector).

Your function could look like this:

string getseq(char* db_file)
{
   string strSeqs;
   vector<string> seqs;

   ... // fill the vector; manipulate with ifstream

   for(vector<string>::iterator it = seqs.begin(); it != seqs.end(); ++it) 
   {
      strSeqs += *it;
   }

   return strSeqs; 
}

Note: string you are returning from a function can be quite big object and returning it by value can be expensive as what is actually returned in this case is a copy of that object (constructed by invoking copy constructor). It would be more efficient if your string is declared as out parameter which you just fill inside the function:

void getseq(char* db_file, string& strSeqs);

string strSeqs;
getseq(argv[1], strSeqs);
cout << strSeqs << endl;