ggpairs prints out a progress bar and estimated remaining time while generating plots, which is nice when used interactively since some of the computations can take a few seconds. But when making documents, like R notebooks, these printed messages end up in the report. ggpairs had a boolean verbose
option, but it's depricated now. Is there an alternative? I can't seem to find one.
To see the messages try:
library(GGally)
ggpairs(mtcars, columns = c("mpg", "cyl", "hp", "disp", "am", "qsec"))
In a document it ends up including:
plot: [1,1] [==-------------------------------------------] 4% est: 0s
plot: [1,2] [====-----------------------------------------] 8% est: 6s
plot: [1,3] [=====----------------------------------------] 12% est: 5s
plot: [1,4] [=======--------------------------------------] 16% est: 5s
etc
The progress = FALSE
argument will work when printing the ggpairs
plot.
ggp = ggpairs(mtcars, columns = c("mpg", "cyl", "hp", "disp"))
print(ggp, progress = F) # no progress bar
print(ggp) # progress bar
It may also depend how you knit
. The function that call the progress bar is ggmatrix_gtable
, with the default value as
progress = interactive() && (pm$ncol * pm$nrow) > 15
Thus no progress bar is printed by default in a non-interactive session.
If you are familiar with dplyr
syntax, maybe the following piping is the most elegant one which do not require saving intermediate variable
mtcars %>%
ggpairs(columns = c("mpg", "cyl", "hp", "disp", "am", "qsec")) %>%
print(progress = F)
'progress' parameter in print function will soon be deprecated.
It can be passed to ggpairs itself:
library(GGally)
ggpairs(mtcars,
columns = c("mpg", "cyl", "hp", "disp", "am", "qsec"),
progress = FALSE)
RStudio screenshot for ggpairs without progress:
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