I'm have issues with stl() time series decomposition function in R telling me my ts object is not univariate when it actually is?
tsData <- ts(data = dummyData, start = c(2012,1), end = c(2014,12), frequency = 12)
> tsData
Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec
2012 22 26 34 33 40 39 39 45 50 58 64 78
2013 51 60 80 80 93 100 96 108 111 119 140 164
2014 103 112 154 135 156 170 146 156 166 176 193 204
> class(tsData)
[1] "ts"
> stl(tsData, s.window = "periodic")
Error in stl(tsData, s.window = "periodic") :
only univariate series are allowed
> dput(dummyData)
structure(list(index = c(22L, 26L, 34L, 33L, 40L, 39L, 39L, 45L,
50L, 58L, 64L, 78L, 51L, 60L, 80L, 80L, 93L, 100L, 96L, 108L,
111L, 119L, 140L, 164L, 103L, 112L, 154L, 135L, 156L, 170L, 146L,
156L, 166L, 176L, 193L, 204L)), .Names = "index", class = "data.frame", row.names = c(NA,
-36L))
Anyone know how to fix this issue?
To avoid these kinds of problems or errors try to make a univariate time series just by forming the raw data points or values, calling ts() function.
Better speaking you should always put only the values of your variable not the whole structure of the variable. Let me explain it a little bit by a very simple example:
Imagine you have a variable X which is a vector (most probably imported or formed from the other data sources)by a 100x1 dimension, i.e. it contains 100 values or data points. If you want to make a univariate time series out of this vector the wrong way to do it is as like as you did for your case:
ts(X, frequency=24)
BE CAREFUL, the CORRECT way to do it is like this:
ts(X[1:100], frequency=24)
or even like this:
ts(X[1:100,1], frequency=24)
I hope my dear friend that you can avoid it for the next time you need to make a univariate time series..!!
I'm not 100% sure about what the exact cause of the problem is, but you can fix this by passing dummyData$index
to ts
instead of the entire object:
tsData2 <- ts(
data=dummyData$index,
start = c(2012,1),
end = c(2014,12),
frequency = 12)
##
R> stl(tsData2, s.window="periodic")
Call:
stl(x = tsData2, s.window = "periodic")
Components
seasonal trend remainder
Jan 2012 -24.0219753 36.19189 9.8300831
Feb 2012 -20.2516062 37.82808 8.4235219
Mar 2012 -0.4812396 39.46428 -4.9830367
Apr 2012 -10.1034302 41.32047 1.7829612
May 2012 0.6077088 43.17666 -3.7843705
Jun 2012 4.4723800 45.22411 -10.6964877
Jul 2012 -7.6629462 47.27155 -0.6086074
Aug 2012 -1.0551286 49.50673 -3.4516016
Sep 2012 2.2193527 51.74191 -3.9612597
Oct 2012 7.3239448 55.27391 -4.5978509
Nov 2012 18.4285405 58.80591 -13.2344456
Dec 2012 30.5244146 63.70105 -16.2254684
...
I'm guessing that when you pass a data.frame
to the data
argument of ts
, some extra attributes carry over, and although this generally doesn't seem to be an issue with many functions that take a ts
class object (univariate or otherwise), apparently it is an issue for stl
.
R> all.equal(tsData2,tsData)
[1] "Attributes: < Names: 1 string mismatch >"
[2] "Attributes: < Length mismatch: comparison on first 2 components >"
[3] "Attributes: < Component 2: Numeric: lengths (3, 2) differ >"
##
R> str(tsData2)
Time-Series [1:36] from 2012 to 2015: 22 26 34 33 40 39 39 45 50 58 ...
##
R> str(tsData)
'ts' int [1:36, 1] 22 26 34 33 40 39 39 45 50 58 ...
- attr(*, "dimnames")=List of 2
..$ : NULL
..$ : chr "index"
- attr(*, "tsp")= num [1:3] 2012 2015 12
Edit:
Looking into this a little further, I think the problem has to do with the dimnames
attribute being carried over from the dummyData
when it is passed as a whole. Note this excerpt from the body of stl
:
if (is.matrix(x))
stop("only univariate series are allowed")
and from the definition of matrix
:
is.matrix returns TRUE if x is a vector and has a "dim" attribute of length 2) and FALSE otherwise
so although you are passing stl
a univariate time series (the original tsData
), as far as the function is concerned, a vector with a length 2 dimnames
attribute (i.e. a matrix
) is not a univariate series. It seems a little strange to do error handling in this way, but I'm sure the author of the function had a very good reason for this.
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