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Spring Data JPA OutOfMemoryError: GC overhead limit exceeded

Tags:

java

spring-boot

spring-data-jpa

jhipster

I'm developing an application with huge size of entities(3072). We used jhipster for project structure. Everthing was ok so far until we want to upgrade Spring Boot version from 1.3.2 ( 1.9.2 spring-data-jpa ) to current 1.5.1 (spring-data-jpa 1.11.0) I'm getting following exception while startup. giving more memory, heap size etc. didnt help. i think problem is somehow related to spring-data-jpa after 1.10.X, because we dont have such problem in spring-data-jpa 1.9.x

    Caused by: org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'ebysMesajTasfiyeJob': Unsatisfied dependency expressed through field 'messageService'; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'ebysMessageService': Unsatisfied dependency expressed through field 'saklamaPlaniService'; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'YEBYSaklamaPlaniService': Unsatisfied dependency expressed through field 'repository'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'YEBYSaklamaPlaniRepository': Cannot resolve reference to bean 'jpaMappingContext' while setting bean property 'mappingContext'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jpaMappingContext': Invocation of init method failed; nested exception is java.lang.OutOfMemoryError: GC overhead limit exceeded
    at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:588)
    at org.springframework.beans.factory.annotation.InjectionMetadata.inject(InjectionMetadata.java:88)
    at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor.postProcessPropertyValues(AutowiredAnnotationBeanPostProcessor.java:366)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1264)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:553)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483)
    at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
    at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
    at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
    at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:761)
    at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:866)
    at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:542)
    at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.refresh(EmbeddedWebApplicationContext.java:122)
    at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:737)
    at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:370)
    at org.springframework.boot.SpringApplication.run(SpringApplication.java:314)
    at org.springframework.boot.web.support.SpringBootServletInitializer.run(SpringBootServletInitializer.java:152)
    at org.springframework.boot.web.support.SpringBootServletInitializer.createRootApplicationContext(SpringBootServletInitializer.java:132)
    at org.springframework.boot.web.support.SpringBootServletInitializer.onStartup(SpringBootServletInitializer.java:87)
    at org.springframework.web.SpringServletContainerInitializer.onStartup(SpringServletContainerInitializer.java:169)
    at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5244)
    at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147)
    ... 42 more
Caused by: org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'ebysMessageService': Unsatisfied dependency expressed through field 'saklamaPlaniService'; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'YEBYSaklamaPlaniService': Unsatisfied dependency expressed through field 'repository'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'YEBYSaklamaPlaniRepository': Cannot resolve reference to bean 'jpaMappingContext' while setting bean property 'mappingContext'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jpaMappingContext': Invocation of init method failed; nested exception is java.lang.OutOfMemoryError: GC overhead limit exceeded
    at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:588)
    at org.springframework.beans.factory.annotation.InjectionMetadata.inject(InjectionMetadata.java:88)
    at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor.postProcessPropertyValues(AutowiredAnnotationBeanPostProcessor.java:366)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1264)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:553)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483)
    at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
    at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
    at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:202)
    at org.springframework.beans.factory.config.DependencyDescriptor.resolveCandidate(DependencyDescriptor.java:208)
    at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1138)
    at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:1066)
    at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:585)
    ... 64 more
Caused by: org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'YEBYSaklamaPlaniService': Unsatisfied dependency expressed through field 'repository'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'YEBYSaklamaPlaniRepository': Cannot resolve reference to bean 'jpaMappingContext' while setting bean property 'mappingContext'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jpaMappingContext': Invocation of init method failed; nested exception is java.lang.OutOfMemoryError: GC overhead limit exceeded
    at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:588)
    at org.springframework.beans.factory.annotation.InjectionMetadata.inject(InjectionMetadata.java:88)
    at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor.postProcessPropertyValues(AutowiredAnnotationBeanPostProcessor.java:366)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1264)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:553)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483)
    at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
    at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
    at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:202)
    at org.springframework.beans.factory.config.DependencyDescriptor.resolveCandidate(DependencyDescriptor.java:208)
    at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1138)
    at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:1066)
    at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:585)
    ... 77 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'YEBYSaklamaPlaniRepository': Cannot resolve reference to bean 'jpaMappingContext' while setting bean property 'mappingContext'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jpaMappingContext': Invocation of init method failed; nested exception is java.lang.OutOfMemoryError: GC overhead limit exceeded
    at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:359)
    at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:108)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1531)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1276)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:553)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483)
    at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
    at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
    at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:202)
    at org.springframework.beans.factory.config.DependencyDescriptor.resolveCandidate(DependencyDescriptor.java:208)
    at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1138)
    at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:1066)
    at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:585)
    ... 90 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jpaMappingContext': Invocation of init method failed; nested exception is java.lang.OutOfMemoryError: GC overhead limit exceeded
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1628)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:555)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483)
    at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
    at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
    at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
    at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:351)
    ... 103 more
Caused by: java.lang.OutOfMemoryError: GC overhead limit exceeded
    at java.util.HashMap.resize(HashMap.java:703)
    at java.util.HashMap.putVal(HashMap.java:662)
    at java.util.HashMap.put(HashMap.java:611)
    at java.util.HashSet.add(HashSet.java:219)
    at org.springframework.data.jpa.util.JpaMetamodel.getManagedTypes(JpaMetamodel.java:85)
    at org.springframework.data.jpa.util.JpaMetamodel.isJpaManaged(JpaMetamodel.java:61)
    at org.springframework.data.jpa.mapping.JpaPersistentPropertyImpl.isEntity(JpaPersistentPropertyImpl.java:159)
    at org.springframework.data.mapping.model.AbstractPersistentProperty.getPersistentEntityType(AbstractPersistentProperty.java:129)
    at org.springframework.data.jpa.mapping.JpaPersistentPropertyImpl.getPersistentEntityType(JpaPersistentPropertyImpl.java:133)
    at org.springframework.data.mapping.context.AbstractMappingContext$PersistentPropertyCreator.createAndRegisterProperty(AbstractMappingContext.java:507)
    at org.springframework.data.mapping.context.AbstractMappingContext$PersistentPropertyCreator.doWith(AbstractMappingContext.java:465)
    at org.springframework.util.ReflectionUtils.doWithFields(ReflectionUtils.java:693)
    at org.springframework.data.mapping.context.AbstractMappingContext.addPersistentEntity(AbstractMappingContext.java:329)
    at org.springframework.data.mapping.context.AbstractMappingContext$PersistentPropertyCreator.createAndRegisterProperty(AbstractMappingContext.java:508)
    at org.springframework.data.mapping.context.AbstractMappingContext$PersistentPropertyCreator.doWith(AbstractMappingContext.java:465)
    at org.springframework.util.ReflectionUtils.doWithFields(ReflectionUtils.java:693)
    at org.springframework.data.mapping.context.AbstractMappingContext.addPersistentEntity(AbstractMappingContext.java:329)
    at org.springframework.data.mapping.context.AbstractMappingContext$PersistentPropertyCreator.createAndRegisterProperty(AbstractMappingContext.java:508)
    at org.springframework.data.mapping.context.AbstractMappingContext$PersistentPropertyCreator.doWith(AbstractMappingContext.java:465)
    at org.springframework.util.ReflectionUtils.doWithFields(ReflectionUtils.java:693)
    at org.springframework.data.mapping.context.AbstractMappingContext.addPersistentEntity(AbstractMappingContext.java:329)
    at org.springframework.data.mapping.context.AbstractMappingContext$PersistentPropertyCreator.createAndRegisterProperty(AbstractMappingContext.java:508)
    at org.springframework.data.mapping.context.AbstractMappingContext$PersistentPropertyCreator.doWith(AbstractMappingContext.java:465)
    at org.springframework.util.ReflectionUtils.doWithFields(ReflectionUtils.java:693)
    at org.springframework.data.mapping.context.AbstractMappingContext.addPersistentEntity(AbstractMappingContext.java:329)
    at org.springframework.data.mapping.context.AbstractMappingContext$PersistentPropertyCreator.createAndRegisterProperty(AbstractMappingContext.java:508)
    at org.springframework.data.mapping.context.AbstractMappingContext$PersistentPropertyCreator.doWith(AbstractMappingContext.java:465)
    at org.springframework.util.ReflectionUtils.doWithFields(ReflectionUtils.java:693)
    at org.springframework.data.mapping.context.AbstractMappingContext.addPersistentEntity(AbstractMappingContext.java:329)
    at org.springframework.data.mapping.context.AbstractMappingContext$PersistentPropertyCreator.createAndRegisterProperty(AbstractMappingContext.java:508)
    at org.springframework.data.mapping.context.AbstractMappingContext$PersistentPropertyCreator.doWith(AbstractMappingContext.java:465)
    at org.springframework.util.ReflectionUtils.doWithFields(ReflectionUtils.java:693)
like image 813
Runomu Avatar asked Feb 15 '17 16:02

Runomu

People also ask

How do I fix GC overhead limit exceeded in eclipse?

From the root of the Eclipse folder open the eclipse. ini and change the default maximum heap size of -Xmx256m to -Xmx1024m on the last line. NOTE: If there is a lot of memory available on the machine, you can also try using -Xmx2048m as the maximum heap size.

What is GC overhead limit?

GC Overhead Limit Exceeded Error It's thrown by the JVM when it encounters a problem related to utilizing resources. More specifically, the error occurs when the JVM spent too much time performing Garbage Collection and was only able to reclaim very little heap space.

1 Answers

GC overhead limit exceeded means that your application has a lot of objects and the GC is spending most of the time collecting those objects. The usual way to solve this would be to take a heap dump and analyze those heap dump using a tool like Eclipse MAT.

From the logs, it seems that the application ran out of memory while putting a value to the HashMap.

You mentioned that you have a lot of entities in your application. Does that mean you are trying to load of data from database at once? In that case, why not modify your application to support pagination. That way, you don't load a lot of data in your application and might avoid this error.

like image 122
Rahul Sharma Avatar answered Sep 19 '22 18:09

Rahul Sharma
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