e.g. i have 3 Steps in Job (similar to Step1):
@Autowired
private StepBuilderFactory stepBuilderFactory;
@Bean
public Step step1() {
    return stepBuilderFactory
            .get("step1")
            .<String, String> chunk(1)
            .reader(reader())
            .processor(processor())
            .writer(writer())
            .build();
}
How go to Step 2 and 3 even after exception in Step 1? I mean configuration in Java.
Here is an example on how to configure it when creating a flow. That should be similar to configure it directly with the job builder:
return new FlowBuilder<SimpleFlow>("name")
    .start(step1) //
    .next(step2).on(ExitStatus.FAILED.getExitCode()).to(errorStep)
    .from(step2).on(ALL_PATTERN).to(step3)
    .build();
                        You can use Skip Listener
@Component
public class CustomSkipListener {
    @OnSkipInRead
    public void onSkipInRead(Throwable t) {
        System.out.println("From onSkipInRead -> " + t.getMessage());
    }
    @OnSkipInWrite
    public void onSkipInWrite(String item, Throwable t) {
        System.out.println("From onSkipInWrite: " + item + " -> " + t.getMessage());
    }
    @OnSkipInProcess
    public void onSkipInProcess(String item, Throwable t) {
        System.out.println("From onSkipInProcess: " + string + " -> " + t.getMessage());
    }
}
Then in your step
@Bean
public Step step1(CustomSkipListener customSkipListener) {
    return stepBuilderFactory
            .get("step1")
            .<String, String> chunk(1)
            .reader(reader())
            .processor(processor())
            .writer(writer())
            .faultTolerant()
            .skipLimit(10)
            .skip(RuntimeException.class)
            .listener(customSkipListener)
            .build();
}
Notice the CHAIN starting from
.faultTolerant(). Adding the listener is not mandatory. If you add thelisteneryou can handle the behaviour when skipping happens.
Some helpful links
http://docs.spring.io/spring-batch/apidocs/org/springframework/batch/core/SkipListener.html
http://docs.spring.io/spring-batch/reference/html/configureStep.html#configuringSkip
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