I would like to be able to specify multiple output formats at the same time, for instance html_document and a pdf_document. I know that this can be done very simply with something like
--- output: [html_document, pdf_document] ---
I might have some of that syntax off, but I can not seem to find the documentation anywhere. I have recently discovered knitr-bootstrap and love it. It is what I have been looking for to be able to dynamically hide my code and output blocks.
Unfortunately, by default, the YAML block for the knitr-bootstrap invocation is quite complex and I do not know how to specify multiple outputs for this.
I have looked at the YAML spec and tried a few different things but I am at a loss. Below is my current YAML frontmatter.
--- title: "Beta Regression Comparison" opset: bootstrap output: knitrBootstrap::bootstrap_document: title: "Beta Regression Comparison" theme: Simplex highlight: Solarized - Light theme.chooser: FALSE highlight.chooser: FALSE menu: FALSE pdf_document ---
The first code chunk: ```{r setup, include=FALSE} knitr::opts_chunk$set(echo = TRUE) ``` is used to specify any global settings to be applied to the R Markdown script. The example sets all code chunks as “echo=TRUE”, meaning they will be included in the final rendered version.
It is a package in the programming language R that enables integration of R code into LaTeX, LyX, HTML, Markdown, AsciiDoc, and reStructuredText documents. The purpose of knitr is to allow reproducible research in R through the means of literate programming. It is licensed under the GNU General Public License.
The usual way to compile an R Markdown document is to click the Knit button as shown in Figure 2.1, and the corresponding keyboard shortcut is Ctrl + Shift + K ( Cmd + Shift + K on macOS). Under the hood, RStudio calls the function rmarkdown::render() to render the document in a new R session.
There are three basic components of an R Markdown document: the metadata, text, and code.
The solution is to change pdf_document
to pdf_document: default
. I can't unfortunately find a reference for this syntax in the official documentation. If however you open a RMarkdown document in a recent version of RStudio, click Knit HTML
and then Knit PDF
, it uses this : default
syntax.
The syntax is:
--- output: html_document: keep_md: yes pdf_document: default ---
In my case, I tried to knit multiple output-documents using bookdown and found this post which allowed me to get the desired result.
You can write the output-definition in your YAML header as follows:
--- output: bookdown::pdf_document2: template: "path-to-my-template" bookdown::word_document2: default knit: (function(inputFile, encoding){ rmarkdown::render(inputFile, encoding = encoding, output_dir = "my-output-path", output_format = "all") }) ---
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