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Spark SQL SaveMode.Overwrite, getting java.io.FileNotFoundException and requiring 'REFRESH TABLE tableName'

For spark sql, how should we fetch data from one folder in HDFS, do some modifications, and save the updated data to the same folder in HDFS via Overwrite save mode without getting FileNotFoundException?

import org.apache.spark.sql.{SparkSession,SaveMode}
import org.apache.spark.SparkConf

val sparkConf: SparkConf = new SparkConf()
val sparkSession = SparkSession.builder.config(sparkConf).getOrCreate()
val df = sparkSession.read.parquet("hdfs://xxx.xxx.xxx.xxx:xx/test/d=2017-03-20")
val newDF = df.select("a","b","c")

newDF.write.mode(SaveMode.Overwrite)
     .parquet("hdfs://xxx.xxx.xxx.xxx:xx/test/d=2017-03-20") // doesn't work
newDF.write.mode(SaveMode.Overwrite)
     .parquet("hdfs://xxx.xxx.xxx.xxx:xx/test/d=2017-03-21") // works

FileNotFoundException happens when we read data from the hdfs dir "d=2017-03-20", and save (SaveMode.Overwrite) updated data to the same hdfs dir "d=2017-03-20"

Caused by: org.apache.spark.SparkException: Task failed while writing rows
  at org.apache.spark.sql.execution.datasources.FileFormatWriter$.org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask(FileFormatWriter.scala:204)
  at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1$$anonfun$3.apply(FileFormatWriter.scala:129)
  at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$write$1$$anonfun$3.apply(FileFormatWriter.scala:128)
  at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
  at org.apache.spark.scheduler.Task.run(Task.scala:99)
  at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:282)
  at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
  at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
  at java.lang.Thread.run(Thread.java:745)
Caused by: java.io.FileNotFoundException: File does not exist: hdfs://xxx.xxx.xxx.xxx:xx/test/d=2017-03-20/part-05020-35ea100f-829e-43d9-9003061-1788904de770.snappy.parquet
It is possible the underlying files have been updated. You can explicitly invalidate the cache in Spark by running 'REFRESH TABLE tableName' command in SQL or by recreating the Dataset/DataFrame involved.
  at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.nextIterator(FileScanRDD.scala:157)
  at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:102)
  at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.scan_nextBatch$(Unknown Source)
  at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.processNext(Unknown Source)
  at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
  at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$8$$anon$1.hasNext(WholeStageCodegenExec.scala:377)
  at org.apache.spark.sql.execution.datasources.FileFormatWriter$SingleDirectoryWriteTask.execute(FileFormatWriter.scala:243)
  at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask$3.apply(FileFormatWriter.scala:190)
  at org.apache.spark.sql.execution.datasources.FileFormatWriter$$anonfun$org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask$3.apply(FileFormatWriter.scala:188)
  at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1341)
  at org.apache.spark.sql.execution.datasources.FileFormatWriter$.org$apache$spark$sql$execution$datasources$FileFormatWriter$$executeTask(FileFormatWriter.scala:193)
  ... 8 more

The following tries still get the same error, how should I solve this problem by using spark sql? Thank you!

val hdfsDirPath = "hdfs://xxx.xxx.xxx.xxx:xx/test/d=2017-03-20"

val df = sparkSession.read.parquet(hdfsDirPath)

val newdf = df
newdf.write.mode(SaveMode.Overwrite).parquet(hdfsDirPath)

// or

val df = sparkSession.read.parquet(hdfsDirPath)
df.createOrReplaceTempView("orgtable")
sparkSession.sql("SELECT * from orgtable").createOrReplaceTempView("tmptable")

sparkSession.sql("TRUNCATE TABLE orgtable")
sparkSession.sql("INSERT INTO orgtable SELECT * FROM tmptable")

val newdf = sparkSession.sql("SELECT * FROM orgtable")
newdf.write.mode(SaveMode.Overwrite).parquet(hdfsDirPath)

// or

val df = sparkSession.read.parquet(hdfsDirPath)
df.createOrReplaceTempView("orgtable")
sparkSession.sql("SELECT * from orgtable").createOrReplaceTempView("tmptable")

sparkSession.sql("REFRESH TABLE orgtable")
sparkSession.sql("ALTER VIEW tmptable RENAME TO orgtable")
    
val newdf = sparkSession.sql("SELECT * FROM orgtable")
newdf.write.mode(SaveMode.Overwrite).parquet(hdfsDirPath)
like image 659
faustineinsun Avatar asked Mar 21 '17 07:03

faustineinsun


1 Answers

I solved this , first I write my Dataframe to a temp directory , and delete the source I reading , and rename the temp directory to source name . QAQ

like image 168
廖梓帆 Avatar answered Jan 11 '23 09:01

廖梓帆