I want to show message like "loading graph" while plotting is in progress.
How do I achieve this?
Expected output:

I figured out a way to do it starting with https://codepen.io/doeg/pen/RWGoLR.
For example, www/custom.css:
.plotly.html-widget.html-widget-output.shiny-bound-output.js-plotly-plot {
  z-index: 22;
  position: relative; 
}
.plotlybars {
  padding: 0 10px;
  vertical-align: bottom;
  width: 100%;
  height: 100%;
  overflow: hidden;
  position: relative;
  box-sizing: border-box;
}
.plotlybars-wrapper {
  width: 165px;
  height: 100px;
  margin: 0 auto;
  left: 0;
  right: 0;
  position: absolute;
  z-index: 1;
}
.plotlybars-text {
  color: #447adb;
  font-family: 'Open Sans', verdana, arial, sans-serif;
  font-size: 80%;
  text-align: center;
  margin-top: 5px;
}
.plotlybars-bar {
  background-color: #447adb;
  height: 100%;
  width: 13.3%;
  position: absolute;
  -webkit-transform: translateZ(0);
  transform: translateZ(0);
  animation-duration: 2s;
  animation-iteration-count: infinite;
  animation-direction: normal;
  animation-timing-function: linear;
  -webkit-animation-duration: 2s;
  -webkit-animation-iteration-count: infinite;
  -webkit-animation-direction: normal;
  -webkit-animation-timing-function: linear;
}
.b1 { left: 0%; top: 88%; animation-name: b1; -webkit-animation-name: b1; }
.b2 { left: 14.3%; top: 76%; animation-name: b2; -webkit-animation-name: b2; }
.b3 { left: 28.6%; top: 16%; animation-name: b3; -webkit-animation-name: b3; }
.b4 { left: 42.9%; top: 40%; animation-name: b4; -webkit-animation-name: b4; }
.b5 { left: 57.2%; top: 26%; animation-name: b5; -webkit-animation-name: b5; }
.b6 { left: 71.5%; top: 67%; animation-name: b6; -webkit-animation-name: b6; }
.b7 { left: 85.8%; top: 89%; animation-name: b7; -webkit-animation-name: b7; }
@keyframes b1 { 0% { top: 88%; } 44% { top: 0%; } 94% { top: 100%; } 100% { top: 88%; } }
@-webkit-keyframes b1 { 0% { top: 88%; } 44% { top: 0%; } 94% { top: 100%; } 100% { top: 88%; } }
@keyframes b2 { 0% { top: 76%; } 38% { top: 0%; } 88% { top: 100%; } 100% { top: 76%; } }
@-webkit-keyframes b2 { 0% { top: 76%; } 38% { top: 0%; } 88% { top: 100%; } 100% { top: 76%; } }
@keyframes b3 { 0% { top: 16%; } 8% { top: 0%; } 58% { top: 100%; } 100% { top: 16%; } }
@-webkit-keyframes b3 { 0% { top: 16%; } 8% { top: 0%; } 58% { top: 100%; } 100% { top: 16%; } }
@keyframes b4 { 0% { top: 40%; } 20% { top: 0%; } 70% { top: 100%; } 100% { top: 40%; } }
@-webkit-keyframes b4 { 0% { top: 40%; } 20% { top: 0%; } 70% { top: 100%; } 100% { top: 40%; } }
@keyframes b5 { 0% { top: 26%; } 13% { top: 0%; } 63% { top: 100%; } 100% { top: 26%; } }
@-webkit-keyframes b5 { 0% { top: 26%; } 13% { top: 0%; } 63% { top: 100%; } 100% { top: 26%; } }
@keyframes b6 { 0% { top: 67%; } 33.5% { top: 0%; } 83% { top: 100%; } 100% { top: 67%; } }
@-webkit-keyframes b6 { 0% { top: 67%; } 33.5% { top: 0%; } 83% { top: 100%; } 100% { top: 67%; } }
@keyframes b7 { 0% { top: 89%; } 44.5% { top: 0%; } 94.5% { top: 100%; } 100% { top: 89%; } }
@-webkit-keyframes b7 { 0% { top: 89%; } 44.5% { top: 0%; } 94.5% { top: 100%; } 100% { top: 89%; } }
and then in app.R:
library(shiny)
library(shinydashboard)
library(plotly)
ui <- dashboardPage(
title = "Loading animation test"
  , dashboardHeader(title = "Animated Test")
  , dashboardSidebar()
    ,dashboardBody(
      tags$head(
        tags$link(rel = "stylesheet", type = "text/css", href = "custom.css")
      )
    , h1("Plotly Bars (Animated CSS)")
    , div(id = "plot-container"
          , div(class = "plotlybars-wrapper"
            , div( class="plotlybars"
              , div(class="plotlybars-bar b1")
              , div(class="plotlybars-bar b2")
              , div(class="plotlybars-bar b3")
              , div(class="plotlybars-bar b4")
              , div(class="plotlybars-bar b5")
              , div(class="plotlybars-bar b6")
              , div(class="plotlybars-bar b7")
            )
            , div(class="plotlybars-text"
              , p("loading")
            )
          )
          , plotlyOutput("plot")
      )
    )
)
server <- function(input, output) {
  Sys.sleep(10) # just for demo so you can enjoy the animation
  output$plot <- renderPlotly({
    plot_ly(
      x = 2, y = 3, type = "scatter", mode = "markers"
    )
  })
}
shinyApp(ui = ui, server = server)
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