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Show correlation values in pairplot using seaborn in python

I have the below data:

prop_tenure  prop_12m  prop_6m  
0.00         0.00      0.00   
0.00         0.00      0.00   
0.06         0.06      0.10   
0.38         0.38      0.25   
0.61         0.61      0.66   
0.01         0.01      0.02   
0.10         0.10      0.12   
0.04         0.04      0.04   
0.22         0.22      0.22 

and I am doing a pairplot as below:

sns.pairplot(data)
plt.show()

However I would like to display the correlation coefficient among the variables and if possible the skewness and kurtosis of each variable. How do you do that in seaborn?

like image 916
Shuvayan Das Avatar asked Jun 13 '18 08:06

Shuvayan Das


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Does Pairplot show correlation?

Correlation. The seaborn library allows to draw a correlation matrix through the pairplot() function. The parameters to create the example graphs are: data : dataframe.

What does Seaborn Pairplot show?

pairplot() : To plot multiple pairwise bivariate distributions in a dataset, you can use the pairplot() function. This shows the relationship for (n, 2) combination of variable in a DataFrame as a matrix of plots and the diagonal plots are the univariate plots.

How do you visualize a correlation in Python?

You can plot correlation between two columns of pandas dataframe using sns. regplot(x=df['column_1'], y=df['column_2']) snippet. You can see the correlation of the two columns of the dataframe as a scatterplot.


Video Answer


2 Answers

As far as I'm aware, there is no out of the box function to do this, you'll have to create your own:

from scipy.stats import pearsonr
import matplotlib.pyplot as plt 

def corrfunc(x, y, ax=None, **kws):
    """Plot the correlation coefficient in the top left hand corner of a plot."""
    r, _ = pearsonr(x, y)
    ax = ax or plt.gca()
    ax.annotate(f'ρ = {r:.2f}', xy=(.1, .9), xycoords=ax.transAxes)

Example using your input:

import seaborn as sns; sns.set(style='white')
import pandas as pd

data = {'prop_tenure': [0.0, 0.0, 0.06, 0.38, 0.61, 0.01, 0.10, 0.04, 0.22], 
        'prop_12m':    [0.0, 0.0, 0.06, 0.38, 0.61, 0.01, 0.10, 0.04, 0.22], 
        'prop_6m':     [0.0, 0.0, 0.10, 0.25, 0.66, 0.02, 0.12, 0.04, 0.22]}

df = pd.DataFrame(data)

g = sns.pairplot(df)
g.map_lower(corrfunc)
plt.show()

enter image description here

like image 92
iacob Avatar answered Oct 10 '22 03:10

iacob


Just to mention, for seaborn in more recent version (>0.11.0) the answer above doesn't work anymore. But you need to add a hue=None to make it work again.

def corrfunc(x, y, hue=None, ax=None, **kws):
    """Plot the correlation coefficient in the top left hand corner of a plot."""
    r, _ = pearsonr(x, y)
    ax = ax or plt.gca()
    ax.annotate(f'ρ = {r:.2f}', xy=(.1, .9), xycoords=ax.transAxes)

Reference this issue https://github.com/mwaskom/seaborn/issues/2307#issuecomment-702980853

like image 1
Binxu Wang 王彬旭 Avatar answered Oct 10 '22 03:10

Binxu Wang 王彬旭