I am looking for incorporate some cython to speed my code. I get a issue with running cython code in Jupyter.
cell 1:
%%cython
cdef fuc():
cdef int a = 0
for i in range(10):
a += i
print(a)
cell 2:
fuc()
error:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)
<ipython-input-48-10789e9d47b8> in <module>()
----> 1 fuc()
NameError: name 'fuc' is not defined
but if i do this, it works fine.
%%cython
def fuc():
cdef int a = 0
for i in range(10):
a += i
print(a)
Looks like cdef is using differently in Jupyter, how could I use cdef in Jupyter notebook?
Use the [Jupyter] notebook or the [Sage] notebook, both of which allow Cython code inline. This is the easiest way to get started writing Cython code and running it.
C Functions declared using cdef or the @cfunc decorator with a Python object return type, like Python functions, will return a None value when execution leaves the function body without an explicit return value. This is in contrast to C/C++, which leaves the return value undefined.
To make your Python into Cython, first you need to create a file with the . pyx extension rather than the . py extension. Inside this file, you can start by writing regular Python code (note that there are some limitations in the Python code accepted by Cython, as clarified in the Cython docs).
Run the cython command-line utility manually to produce the .c file from the .pyx file, then manually compiling the .c file into a shared object library or DLL suitable for import from Python. (These manual steps are mostly for debugging and experimentation.) Use the [Jupyter] notebook or the [Sage] notebook, both of which allow Cython code inline.
Using the Python kernel; a computational engine that runs code that is typed within the notebooks, code is executed and the result neatly displayed immediately after each cell. Before we can get started with installing Jupyter we need to make sure that Python is installed.
So to get Jupyter installed we first need to visit the official Jupyter website. As of today, Jupyter offers two main products: the Jupyter Notebook and the JupyterLab.
To launch JupyterLab, we need to type the command below in the command prompt and press the enter button. This command is going to start the local server so that we can access Jupyter using the browser.
cdef
functions can only be called from Cython, not Python. The documentation says
Within a Cython module, Python functions and C functions can call each other freely, but only Python functions can be called from outside the module by interpreted Python code.
(having already stated that "C functions" are defined by cdef
and "Python functions" by def
.)
Use a def
function in Cython instead. It's still compiled by Cython. You can still cdef
types within your def
function.
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