In R, I have prepared multiple ggplot2 figures, that are saved to variables like this:
flashplot <- ggplot(flash, aes(x=flash$Year, y=flash$Proc))
+ stat_smooth(method="lm", formula = "flash$Proc ~ poly(flash$Year, 2, raw=TRUE)", n=14, level=0.9)
+ geom_point(shape=19) + ylab("Percentage of total existing versions")
+ xlab("Years of Existence") + scale_x_continuous(breaks = c(0,2,4,6,8,10,12,14,16,18,20))
plotting a single figure works as expected, but I want to plot 4 figures (2 by 2) using multiplot, as described in the R cookbook.
As I got an error, I tried the example from the cookbook, which I thould would work, but it gave me the same error:
> multiplot(p1, p2, p3, p4, cols=2)
Error in UseMethod("getModelInfo", model) :
no applicable method for 'getModelInfo' applied to an object of class "c('gg', 'ggplot')"
I am using R 2.15.2 under Windows 7, and the newest packages of ggplot2 and coefplot:
> sessionInfo()
R version 2.15.2 (2012-10-26)
Platform: i386-w64-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=German_Austria.1252 LC_CTYPE=German_Austria.1252
[3] LC_MONETARY=German_Austria.1252 LC_NUMERIC=C
[5] LC_TIME=German_Austria.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] coefplot_1.1.8 ggplot2_0.9.3
loaded via a namespace (and not attached):
[1] colorspace_1.2-0 dichromat_1.2-4 digest_0.6.0 grid_2.15.2
[5] gtable_0.1.2 labeling_0.1 MASS_7.3-22 munsell_0.4
[9] plyr_1.8 proto_0.3-9.2 RColorBrewer_1.0-5 reshape2_1.2.2
[13] scales_0.2.3 stringr_0.6.2 useful_1.1.6
any hints to help me solving my problem would be highly appreciated. Am I missing something? I already searched the web, but found nothing helpful
-- As requested, here is the example data:
library(ggplot2)
# This example uses the ChickWeight dataset, which comes with ggplot2
# First plot
p1 <-
ggplot(ChickWeight, aes(x=Time, y=weight, colour=Diet, group=Chick)) +
geom_line() +
ggtitle("Growth curve for individual chicks")
# Second plot
p2 <-
ggplot(ChickWeight, aes(x=Time, y=weight, colour=Diet)) +
geom_point(alpha=.3) +
geom_smooth(alpha=.2, size=1) +
ggtitle("Fitted growth curve per diet")
# Third plot
p3 <-
ggplot(subset(ChickWeight, Time==21), aes(x=weight, colour=Diet)) +
geom_density() +
ggtitle("Final weight, by diet")
# Fourth plot
p4 <-
ggplot(subset(ChickWeight, Time==21), aes(x=weight, fill=Diet)) +
geom_histogram(colour="black", binwidth=50) +
facet_grid(Diet ~ .) +
ggtitle("Final weight, by diet") +
theme(legend.position="none") # No legend (redundant in this graph)
multiplot(p1, p2, p3, p4, cols=2)
There is a much easier option to do the same by using an inbuilt function called grid.arrange(). You need to install the package called gridExtra to use it:
grid.arrange(p1,p2,p3,p4, ncol = 2, main = "Main title")
Reference
Problem solved. I thought I should uses the predefined multiplot function from the coefplot package, but in fact I had to use the custom function, that has been defined on the R cookbook page.
multiplot <- function(..., plotlist=NULL, file, cols=1, layout=NULL) {
require(grid)
# Make a list from the ... arguments and plotlist
plots <- c(list(...), plotlist)
numPlots = length(plots)
# If layout is NULL, then use 'cols' to determine layout
if (is.null(layout)) {
# Make the panel
# ncol: Number of columns of plots
# nrow: Number of rows needed, calculated from # of cols
layout <- matrix(seq(1, cols * ceiling(numPlots/cols)),
ncol = cols, nrow = ceiling(numPlots/cols))
}
if (numPlots==1) {
print(plots[[1]])
} else {
# Set up the page
grid.newpage()
pushViewport(viewport(layout = grid.layout(nrow(layout), ncol(layout))))
# Make each plot, in the correct location
for (i in 1:numPlots) {
# Get the i,j matrix positions of the regions that contain this subplot
matchidx <- as.data.frame(which(layout == i, arr.ind = TRUE))
print(plots[[i]], vp = viewport(layout.pos.row = matchidx$row,
layout.pos.col = matchidx$col))
}
}
}
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