I just updated to R 4.1.0 and re-installed my packages and Rstudio (on Ubuntu 20.04). Now R runs out of memory and crashes when I try to make any ggplot. The error message is long and I can't fully read it because the R session immediately aborts, but it mentions "missing nul terminator"
, "process memory read out of range"
and a bunch of lines of [XXXX:XXXX:YYYYYYYY,ZZZZZZ,AAAAAA ERROR: elf_dynamic_array_reader.h:61] tag not found
and finally [XXXX:XXXX:YYYYYYYY,ZZZZZZ,AAAAAA] ERROR directory_reader_posix.cc:42] opendir: No such file or directory (2)
(where X, Y, Z, and A are numbers).
I originally got this error with my data but it seems to happen with any ggplot:
library(ggplot2)
ggplot(mtcars, aes(x = cyl, y = mpg)) + geom_boxplot()
I think it's to do with actually displaying the plot because it doesn't crash when I save the plot into a variable and then ggsave()
it, and the resulting file is fine. It's also OK when I do ggplot(...)
within a function with ggsave()
in the next line.
The same plot in base R works fine.
boxplot(mpg~cyl, data = mtcars)
==> displays boxplot in the Plots pane
Reinstalling ggplot2 with install.packages()
didn't fix the problem, and I tried to sudo apt install ./rstudio-1.4.1106-amd64.deb
again but it just says Rstudio is already the newest version.
This tweet from Kevin Ushey says:
PSA: If you're an RStudio user planning to upgrade to R 4.1.0, you may want to install the preview release of RStudio (https://rstudio.com/products/rstudio/download/preview/) -- otherwise, you may see RStudio crash when you try to use ggplot2.
The version number is "1.4.1714-2 Preview", so well ahead of the 1.4.1106 version you're installing via apt
. Release notes on that page include
Support for the upcoming R 4.1.0 release, including the new |> pipe, (x) function shorthand, and new graphics engine.
Another alternative would be to downgrade R to an older version; for Windows the 4.0.5 binary appears to be available here. Unfortunately, the MacOS download page only appears to offer 3.6.3 in previous versions (not any 4.0.x releases) — which feels like a long way to downgrade.
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