I understand how to create simple quantiles in Pandas using pd.qcut. But after searching around, I don't see anything to create weighted quantiles. Specifically, I wish to create a variable which bins the values of a variable of interest (from smallest to largest) such that each bin contains an equal weight. So far this is what I have:
def wtdQuantile(dataframe, var, weight = None, n = 10):
if weight == None:
return pd.qcut(dataframe[var], n, labels = False)
else:
dataframe.sort_values(var, ascending = True, inplace = True)
cum_sum = dataframe[weight].cumsum()
cutoff = max(cum_sum)/n
quantile = cum_sum/cutoff
quantile[-1:] -= 1
return quantile.map(int)
Is there an easier way, or something prebuilt from Pandas that I'm missing?
Edit: As requested, I'm providing some sample data. In the following, I'm trying to bin the "Var" variable using "Weight" as the weight. Using pd.qcut
, we get an equal number of observations in each bin. Instead, I want an equal weight in each bin, or in this case, as close to equal as possible.
Weight Var pd.qcut(n=5) Desired_Rslt
10 1 0 0
14 2 0 0
18 3 1 0
15 4 1 1
30 5 2 1
12 6 2 2
20 7 3 2
25 8 3 3
29 9 4 3
45 10 4 4
Pandas DataFrame quantile() Method The quantile() method calculates the quantile of the values in a given axis. Default axis is row. By specifying the column axis ( axis='columns' ), the quantile() method calculates the quantile column-wise and returns the mean value for each row.
In Python, the numpy. quantile() function takes an array and a number say q between 0 and 1. It returns the value at the q th quantile.
To find percentiles of a numeric column in a DataFrame, or the percentiles of a Series in pandas, the easiest way is to use the pandas quantile() function. You can also use the numpy percentile() function.
I don't think this is built-in to Pandas, but here is a function that does what you want in a few lines:
import numpy as np
import pandas as pd
from pandas._libs.lib import is_integer
def weighted_qcut(values, weights, q, **kwargs):
'Return weighted quantile cuts from a given series, values.'
if is_integer(q):
quantiles = np.linspace(0, 1, q + 1)
else:
quantiles = q
order = weights.iloc[values.argsort()].cumsum()
bins = pd.cut(order / order.iloc[-1], quantiles, **kwargs)
return bins.sort_index()
We can test it on your data this way:
data = pd.DataFrame({
'var': range(1, 11),
'weight': [10, 14, 18, 15, 30, 12, 20, 25, 29, 45]
})
data['qcut'] = pd.qcut(data['var'], 5, labels=False)
data['weighted_qcut'] = weighted_qcut(data['var'], data['weight'], 5, labels=False)
print(data)
The output matches your desired result from above:
var weight qcut weighted_qcut
0 1 10 0 0
1 2 14 0 0
2 3 18 1 0
3 4 15 1 1
4 5 30 2 1
5 6 12 2 2
6 7 20 3 2
7 8 25 3 3
8 9 29 4 3
9 10 45 4 4
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